miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 21227 0.67 0.200463
Target:  5'- cAGGCCGCgcUGUUGaaccagggCGCggacacggcggccaaGCUGGGCAGCg -3'
miRNA:   3'- -UCCGGCG--GCAGCg-------GCG---------------CGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 12295 0.66 0.208359
Target:  5'- -uGCCGCUGUUGCCgguGUGCUgcgucccgaccagGGGCAGg -3'
miRNA:   3'- ucCGGCGGCAGCGG---CGCGA-------------CCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 5632 0.66 0.208895
Target:  5'- cGGCCagcguuggcGCCGUCGauaCCGUGgC-GGGCGACc -3'
miRNA:   3'- uCCGG---------CGGCAGC---GGCGC-GaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 37185 0.66 0.21432
Target:  5'- cAGGUCgagGCCGUagGCCGCGagcacgUGGcGCAGCa -3'
miRNA:   3'- -UCCGG---CGGCAg-CGGCGCg-----ACC-CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 21338 0.66 0.219865
Target:  5'- uGGGCCGacaCuuaCGCCGacauGCUGGGCAu- -3'
miRNA:   3'- -UCCGGCg--Gca-GCGGCg---CGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 12092 0.66 0.230738
Target:  5'- uGGGCaagaccuCGCCGgccacgGCCGCGCUGcuGGcCGACg -3'
miRNA:   3'- -UCCG-------GCGGCag----CGGCGCGAC--CC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 3543 0.66 0.231322
Target:  5'- cGGGCCGUCGuucUCGuUCGCGUucuucgGGGCGcGCg -3'
miRNA:   3'- -UCCGGCGGC---AGC-GGCGCGa-----CCCGU-UG- -5'
26453 3' -64.4 NC_005357.1 + 748 0.66 0.231322
Target:  5'- cGGCCcgGCCGgCGCCGC-CguaGGCGGCc -3'
miRNA:   3'- uCCGG--CGGCaGCGGCGcGac-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 36760 0.66 0.237238
Target:  5'- -uGUCGCacaGaUCGCCcagcGCGCcGGGCAGCg -3'
miRNA:   3'- ucCGGCGg--C-AGCGG----CGCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 41603 0.65 0.241453
Target:  5'- aGGGCCGCCGcguuguuccagaagUUGaCCGCGCUuucGUAGCc -3'
miRNA:   3'- -UCCGGCGGC--------------AGC-GGCGCGAcc-CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 27491 0.71 0.098961
Target:  5'- cGGCCGCCGggCGCgGUGCgccaGGcgcGCGACg -3'
miRNA:   3'- uCCGGCGGCa-GCGgCGCGa---CC---CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 4944 1.09 8.7e-05
Target:  5'- gAGGCCGCCGUCGCCGCGCUGGGCAACg -3'
miRNA:   3'- -UCCGGCGGCAGCGGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 25150 0.8 0.019821
Target:  5'- cGG-CGCCGggcgCGCUGCGCUGGGUGGCg -3'
miRNA:   3'- uCCgGCGGCa---GCGGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 24621 0.78 0.028744
Target:  5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3'
miRNA:   3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 12358 0.76 0.037136
Target:  5'- -cGCCGCCGUaGCCGgcaCGCUGGGcCAGCa -3'
miRNA:   3'- ucCGGCGGCAgCGGC---GCGACCC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 41704 0.75 0.047917
Target:  5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3'
miRNA:   3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5'
26453 3' -64.4 NC_005357.1 + 6911 0.74 0.052148
Target:  5'- gGGGCCuacgaaaagGCCGUCGCCGa---GGGCAACg -3'
miRNA:   3'- -UCCGG---------CGGCAGCGGCgcgaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 14348 0.73 0.065281
Target:  5'- uGGGCCGCa-UCGCCGacaGCaUGGuGCAGCa -3'
miRNA:   3'- -UCCGGCGgcAGCGGCg--CG-ACC-CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 4447 0.73 0.070987
Target:  5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3'
miRNA:   3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 1371 0.72 0.076957
Target:  5'- uGGUgGCCGUCGCCcuggGCGCggcggugUGGGCGGg -3'
miRNA:   3'- uCCGgCGGCAGCGG----CGCG-------ACCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.