Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26453 | 3' | -64.4 | NC_005357.1 | + | 24621 | 0.78 | 0.028744 |
Target: 5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3' miRNA: 3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 25020 | 0.68 | 0.164354 |
Target: 5'- cGGGuuGCCGUCcgagucaaaccacguGUCGCGCgauccgccguuaccaUcGGGCAGCa -3' miRNA: 3'- -UCCggCGGCAG---------------CGGCGCG---------------A-CCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 25150 | 0.8 | 0.019821 |
Target: 5'- cGG-CGCCGggcgCGCUGCGCUGGGUGGCg -3' miRNA: 3'- uCCgGCGGCa---GCGGCGCGACCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 25668 | 0.68 | 0.165225 |
Target: 5'- -cGCCGCCGUgGuuGCcacugcCUGGGCcGCa -3' miRNA: 3'- ucCGGCGGCAgCggCGc-----GACCCGuUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 25727 | 0.7 | 0.11011 |
Target: 5'- gGGGUCGUCGUCcucaccggcggcaGCaCGCugggcgcgcuGCUGGGCGGCg -3' miRNA: 3'- -UCCGGCGGCAG-------------CG-GCG----------CGACCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 25829 | 0.66 | 0.219305 |
Target: 5'- cGGGCCGCCGUUGgCGCcggucaguuccauGCUGGu---- -3' miRNA: 3'- -UCCGGCGGCAGCgGCG-------------CGACCcguug -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 27491 | 0.71 | 0.098961 |
Target: 5'- cGGCCGCCGggCGCgGUGCgccaGGcgcGCGACg -3' miRNA: 3'- uCCGGCGGCa-GCGgCGCGa---CC---CGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 27553 | 0.7 | 0.113462 |
Target: 5'- gAGGCCGCCGgcauccucgCGUgGUGC-GuGGCGGCg -3' miRNA: 3'- -UCCGGCGGCa--------GCGgCGCGaC-CCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 27899 | 0.68 | 0.16964 |
Target: 5'- cGGcGCgGCCGgCGCCacCGC-GGGCAGCg -3' miRNA: 3'- -UC-CGgCGGCaGCGGc-GCGaCCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 28252 | 0.69 | 0.144666 |
Target: 5'- aAGG-CGCCGcaccUGCUGgGCgUGGGCAACg -3' miRNA: 3'- -UCCgGCGGCa---GCGGCgCG-ACCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 28557 | 0.73 | 0.069226 |
Target: 5'- cGGCCGCCGgccaUCGCgGCGCgcacgucggccaccGGCAGCg -3' miRNA: 3'- uCCGGCGGC----AGCGgCGCGac------------CCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 28822 | 0.68 | 0.156703 |
Target: 5'- -aGCgCGCCGUCGUCGgGUUGcGGCcgGACu -3' miRNA: 3'- ucCG-GCGGCAGCGGCgCGAC-CCG--UUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 28926 | 0.69 | 0.12993 |
Target: 5'- gAGGaCGUgG-CGCgGCGCUGGGaCAGCu -3' miRNA: 3'- -UCCgGCGgCaGCGgCGCGACCC-GUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 29390 | 0.7 | 0.119801 |
Target: 5'- uGGCCGgCGacCGCCaccgccuugaaGUGCUGGGCAAg -3' miRNA: 3'- uCCGGCgGCa-GCGG-----------CGCGACCCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 29530 | 0.67 | 0.198401 |
Target: 5'- uGGCCGCgcgcuCGUCGCCugGUGCcaggagcaccUGGGCGcgACg -3' miRNA: 3'- uCCGGCG-----GCAGCGG--CGCG----------ACCCGU--UG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 29540 | 0.66 | 0.208895 |
Target: 5'- uGGCCGCagaGgacacccaCGCCGUGCUcgGGGUAucGCg -3' miRNA: 3'- uCCGGCGg--Ca-------GCGGCGCGA--CCCGU--UG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 29731 | 0.7 | 0.119801 |
Target: 5'- --aCgGCCG-CGCCcUGCUGGGCAACg -3' miRNA: 3'- uccGgCGGCaGCGGcGCGACCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 30027 | 0.7 | 0.103683 |
Target: 5'- cAGGCCGUCGUgCGCCGCGacgacaagcaccacCUGacuGGCAAg -3' miRNA: 3'- -UCCGGCGGCA-GCGGCGC--------------GAC---CCGUUg -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 30272 | 0.67 | 0.18837 |
Target: 5'- uGGUCGCgcgaGUCGCCGgaaaaCGUcGGGUAGCg -3' miRNA: 3'- uCCGGCGg---CAGCGGC-----GCGaCCCGUUG- -5' |
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26453 | 3' | -64.4 | NC_005357.1 | + | 32432 | 0.69 | 0.138597 |
Target: 5'- uGGGCgGCCGggGCCucggcggcgaccgcaGCGacCUGGGCGGCg -3' miRNA: 3'- -UCCGgCGGCagCGG---------------CGC--GACCCGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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