miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 5632 0.66 0.208895
Target:  5'- cGGCCagcguuggcGCCGUCGauaCCGUGgC-GGGCGACc -3'
miRNA:   3'- uCCGG---------CGGCAGC---GGCGC-GaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 2155 0.7 0.106851
Target:  5'- uGGGCgCGCUacauggacgacaUCGUgGUGCUGGGCGACg -3'
miRNA:   3'- -UCCG-GCGGc-----------AGCGgCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 748 0.66 0.231322
Target:  5'- cGGCCcgGCCGgCGCCGC-CguaGGCGGCc -3'
miRNA:   3'- uCCGG--CGGCaGCGGCGcGac-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 10548 0.7 0.107144
Target:  5'- cGGCCcguucggGCCGgUGCUGCGCgacuuccaGGGCGACg -3'
miRNA:   3'- uCCGG-------CGGCaGCGGCGCGa-------CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 13454 0.68 0.17416
Target:  5'- -uGCCGCCuacaacCG-CGCGCUGGGCAu- -3'
miRNA:   3'- ucCGGCGGca----GCgGCGCGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 10819 0.68 0.17416
Target:  5'- cGGGCCGaaGUCGagCGCGCccuUGGcgaGCAGCa -3'
miRNA:   3'- -UCCGGCggCAGCg-GCGCG---ACC---CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 36760 0.66 0.237238
Target:  5'- -uGUCGCacaGaUCGCCcagcGCGCcGGGCAGCg -3'
miRNA:   3'- ucCGGCGg--C-AGCGG----CGCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 27899 0.68 0.16964
Target:  5'- cGGcGCgGCCGgCGCCacCGC-GGGCAGCg -3'
miRNA:   3'- -UC-CGgCGGCaGCGGc-GCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 12092 0.66 0.230738
Target:  5'- uGGGCaagaccuCGCCGgccacgGCCGCGCUGcuGGcCGACg -3'
miRNA:   3'- -UCCG-------GCGGCag----CGGCGCGAC--CC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 11157 0.71 0.090868
Target:  5'- uGGGCCGCCugcgcacGUUGCgUGCGCUGGuCGGCc -3'
miRNA:   3'- -UCCGGCGG-------CAGCG-GCGCGACCcGUUG- -5'
26453 3' -64.4 NC_005357.1 + 8212 0.67 0.18837
Target:  5'- cGGCC-UCGUaGUCGCGCUGGuCGGCg -3'
miRNA:   3'- uCCGGcGGCAgCGGCGCGACCcGUUG- -5'
26453 3' -64.4 NC_005357.1 + 39849 0.69 0.137116
Target:  5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3'
miRNA:   3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5'
26453 3' -64.4 NC_005357.1 + 30272 0.67 0.18837
Target:  5'- uGGUCGCgcgaGUCGCCGgaaaaCGUcGGGUAGCg -3'
miRNA:   3'- uCCGGCGg---CAGCGGC-----GCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 3883 0.67 0.183523
Target:  5'- uAGGCCgcgcuGCCGUCGCCGCcgaaCUuGGUAGa -3'
miRNA:   3'- -UCCGG-----CGGCAGCGGCGc---GAcCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 23554 0.67 0.178787
Target:  5'- uGGCCucgGCCGacaUCGCCggcaggugcggGCGggGGGCGACg -3'
miRNA:   3'- uCCGG---CGGC---AGCGG-----------CGCgaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 34706 0.68 0.17416
Target:  5'- cGGCCGCCGa-GCgUGCGCUGcaguucaucGGCAAg -3'
miRNA:   3'- uCCGGCGGCagCG-GCGCGAC---------CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 17655 0.68 0.17416
Target:  5'- cGGCCacgaucuugauGgCGUCGgCGgGCUGGGCGuagGCg -3'
miRNA:   3'- uCCGG-----------CgGCAGCgGCgCGACCCGU---UG- -5'
26453 3' -64.4 NC_005357.1 + 14425 0.68 0.17416
Target:  5'- cAGGCgCGCCugcggCaCCGUGUUGGGCGAa -3'
miRNA:   3'- -UCCG-GCGGca---GcGGCGCGACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 4354 0.69 0.140845
Target:  5'- uGGCCGUugCGUUGCCgguGCGCgugaaGGCGACg -3'
miRNA:   3'- uCCGGCG--GCAGCGG---CGCGac---CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 20278 0.69 0.139716
Target:  5'- uGGCCGUCGUUGcCCGCaccaguagcggguuGCUcGGCGGCc -3'
miRNA:   3'- uCCGGCGGCAGC-GGCG--------------CGAcCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.