miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 1522 0.69 0.12958
Target:  5'- gAGGCCGCCGaccgCGCCGUcaagaagguguuuGCcaucuUGGGCGu- -3'
miRNA:   3'- -UCCGGCGGCa---GCGGCG-------------CG-----ACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 27553 0.7 0.113462
Target:  5'- gAGGCCGCCGgcauccucgCGUgGUGC-GuGGCGGCg -3'
miRNA:   3'- -UCCGGCGGCa--------GCGgCGCGaC-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 37934 0.71 0.096278
Target:  5'- gAGGCCGaaGUCGCCgagGCGCUGcucggugcgccaGGCGAg -3'
miRNA:   3'- -UCCGGCggCAGCGG---CGCGAC------------CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 12358 0.76 0.037136
Target:  5'- -cGCCGCCGUaGCCGgcaCGCUGGGcCAGCa -3'
miRNA:   3'- ucCGGCGGCAgCGGC---GCGACCC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 23159 0.67 0.178787
Target:  5'- gGGcGCCGCCGUUGgCGUcg-GGGCGAg -3'
miRNA:   3'- -UC-CGGCGGCAGCgGCGcgaCCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 28252 0.69 0.144666
Target:  5'- aAGG-CGCCGcaccUGCUGgGCgUGGGCAACg -3'
miRNA:   3'- -UCCgGCGGCa---GCGGCgCG-ACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 10548 0.7 0.107144
Target:  5'- cGGCCcguucggGCCGgUGCUGCGCgacuuccaGGGCGACg -3'
miRNA:   3'- uCCGG-------CGGCaGCGGCGCGa-------CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 24621 0.78 0.028744
Target:  5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3'
miRNA:   3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 32432 0.69 0.138597
Target:  5'- uGGGCgGCCGggGCCucggcggcgaccgcaGCGacCUGGGCGGCg -3'
miRNA:   3'- -UCCGgCGGCagCGG---------------CGC--GACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 25150 0.8 0.019821
Target:  5'- cGG-CGCCGggcgCGCUGCGCUGGGUGGCg -3'
miRNA:   3'- uCCgGCGGCa---GCGGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 33143 0.7 0.110411
Target:  5'- uAGGCCGCCGcgUCGCUGCGCgaccCGAUg -3'
miRNA:   3'- -UCCGGCGGC--AGCGGCGCGacccGUUG- -5'
26453 3' -64.4 NC_005357.1 + 28926 0.69 0.12993
Target:  5'- gAGGaCGUgG-CGCgGCGCUGGGaCAGCu -3'
miRNA:   3'- -UCCgGCGgCaGCGgCGCGACCC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 30027 0.7 0.103683
Target:  5'- cAGGCCGUCGUgCGCCGCGacgacaagcaccacCUGacuGGCAAg -3'
miRNA:   3'- -UCCGGCGGCA-GCGGCGC--------------GAC---CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 20362 0.71 0.096278
Target:  5'- cGGCCGCCGagcaaccCGCUacugGUGC-GGGCAACg -3'
miRNA:   3'- uCCGGCGGCa------GCGG----CGCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 4447 0.73 0.070987
Target:  5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3'
miRNA:   3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 41704 0.75 0.047917
Target:  5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3'
miRNA:   3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5'
26453 3' -64.4 NC_005357.1 + 29530 0.67 0.198401
Target:  5'- uGGCCGCgcgcuCGUCGCCugGUGCcaggagcaccUGGGCGcgACg -3'
miRNA:   3'- uCCGGCG-----GCAGCGG--CGCG----------ACCCGU--UG- -5'
26453 3' -64.4 NC_005357.1 + 24505 0.67 0.18837
Target:  5'- -uGUCGCCGagGCCGCGC-GcGGCAccgACa -3'
miRNA:   3'- ucCGGCGGCagCGGCGCGaC-CCGU---UG- -5'
26453 3' -64.4 NC_005357.1 + 6649 0.68 0.17416
Target:  5'- uGG-UGCCG--GCCGUGCUGGGCuACu -3'
miRNA:   3'- uCCgGCGGCagCGGCGCGACCCGuUG- -5'
26453 3' -64.4 NC_005357.1 + 12741 0.69 0.144666
Target:  5'- cGGGCC-UCGacacgCGCCuGCGCaugaUGGGCGACg -3'
miRNA:   3'- -UCCGGcGGCa----GCGG-CGCG----ACCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.