miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 24225 0.7 0.104538
Target:  5'- aAGcGCgcaGCCGUCGagGCGCUGGGCcaGGCg -3'
miRNA:   3'- -UC-CGg--CGGCAGCggCGCGACCCG--UUG- -5'
26453 3' -64.4 NC_005357.1 + 4944 1.09 8.7e-05
Target:  5'- gAGGCCGCCGUCGCCGCGCUGGGCAACg -3'
miRNA:   3'- -UCCGGCGGCAGCGGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 25150 0.8 0.019821
Target:  5'- cGG-CGCCGggcgCGCUGCGCUGGGUGGCg -3'
miRNA:   3'- uCCgGCGGCa---GCGGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 13084 0.72 0.086222
Target:  5'- gAGGCCGUCGcCaCUGCGCUGcGCGGCc -3'
miRNA:   3'- -UCCGGCGGCaGcGGCGCGACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 37934 0.71 0.096278
Target:  5'- gAGGCCGaaGUCGCCgagGCGCUGcucggugcgccaGGCGAg -3'
miRNA:   3'- -UCCGGCggCAGCGG---CGCGAC------------CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 24621 0.78 0.028744
Target:  5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3'
miRNA:   3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 14348 0.73 0.065281
Target:  5'- uGGGCCGCa-UCGCCGacaGCaUGGuGCAGCa -3'
miRNA:   3'- -UCCGGCGgcAGCGGCg--CG-ACC-CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 1371 0.72 0.076957
Target:  5'- uGGUgGCCGUCGCCcuggGCGCggcggugUGGGCGGg -3'
miRNA:   3'- uCCGgCGGCAGCGG----CGCG-------ACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 30027 0.7 0.103683
Target:  5'- cAGGCCGUCGUgCGCCGCGacgacaagcaccacCUGacuGGCAAg -3'
miRNA:   3'- -UCCGGCGGCA-GCGGCGC--------------GAC---CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 33143 0.7 0.110411
Target:  5'- uAGGCCGCCGcgUCGCUGCGCgaccCGAUg -3'
miRNA:   3'- -UCCGGCGGC--AGCGGCGCGacccGUUG- -5'
26453 3' -64.4 NC_005357.1 + 41603 0.65 0.241453
Target:  5'- aGGGCCGCCGcguuguuccagaagUUGaCCGCGCUuucGUAGCc -3'
miRNA:   3'- -UCCGGCGGC--------------AGC-GGCGCGAcc-CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 41704 0.75 0.047917
Target:  5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3'
miRNA:   3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5'
26453 3' -64.4 NC_005357.1 + 12358 0.76 0.037136
Target:  5'- -cGCCGCCGUaGCCGgcaCGCUGGGcCAGCa -3'
miRNA:   3'- ucCGGCGGCAgCGGC---GCGACCC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 27491 0.71 0.098961
Target:  5'- cGGCCGCCGggCGCgGUGCgccaGGcgcGCGACg -3'
miRNA:   3'- uCCGGCGGCa-GCGgCGCGa---CC---CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 14974 0.71 0.102835
Target:  5'- gAGGCCgGCCagcagcagaUCGCCGCGCagacccugaaagccGGGCAACu -3'
miRNA:   3'- -UCCGG-CGGc--------AGCGGCGCGa-------------CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 6911 0.74 0.052148
Target:  5'- gGGGCCuacgaaaagGCCGUCGCCGa---GGGCAACg -3'
miRNA:   3'- -UCCGG---------CGGCAGCGGCgcgaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 10548 0.7 0.107144
Target:  5'- cGGCCcguucggGCCGgUGCUGCGCgacuuccaGGGCGACg -3'
miRNA:   3'- uCCGG-------CGGCaGCGGCGCGa-------CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 27553 0.7 0.113462
Target:  5'- gAGGCCGCCGgcauccucgCGUgGUGC-GuGGCGGCg -3'
miRNA:   3'- -UCCGGCGGCa--------GCGgCGCGaC-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 4447 0.73 0.070987
Target:  5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3'
miRNA:   3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 20362 0.71 0.096278
Target:  5'- cGGCCGCCGagcaaccCGCUacugGUGC-GGGCAACg -3'
miRNA:   3'- uCCGGCGGCa------GCGG----CGCGaCCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.