miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 29530 0.67 0.198401
Target:  5'- uGGCCGCgcgcuCGUCGCCugGUGCcaggagcaccUGGGCGcgACg -3'
miRNA:   3'- uCCGGCG-----GCAGCGG--CGCG----------ACCCGU--UG- -5'
26453 3' -64.4 NC_005357.1 + 29390 0.7 0.119801
Target:  5'- uGGCCGgCGacCGCCaccgccuugaaGUGCUGGGCAAg -3'
miRNA:   3'- uCCGGCgGCa-GCGG-----------CGCGACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 28926 0.69 0.12993
Target:  5'- gAGGaCGUgG-CGCgGCGCUGGGaCAGCu -3'
miRNA:   3'- -UCCgGCGgCaGCGgCGCGACCC-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 28822 0.68 0.156703
Target:  5'- -aGCgCGCCGUCGUCGgGUUGcGGCcgGACu -3'
miRNA:   3'- ucCG-GCGGCAGCGGCgCGAC-CCG--UUG- -5'
26453 3' -64.4 NC_005357.1 + 28557 0.73 0.069226
Target:  5'- cGGCCGCCGgccaUCGCgGCGCgcacgucggccaccGGCAGCg -3'
miRNA:   3'- uCCGGCGGC----AGCGgCGCGac------------CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 28252 0.69 0.144666
Target:  5'- aAGG-CGCCGcaccUGCUGgGCgUGGGCAACg -3'
miRNA:   3'- -UCCgGCGGCa---GCGGCgCG-ACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 27899 0.68 0.16964
Target:  5'- cGGcGCgGCCGgCGCCacCGC-GGGCAGCg -3'
miRNA:   3'- -UC-CGgCGGCaGCGGc-GCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 27553 0.7 0.113462
Target:  5'- gAGGCCGCCGgcauccucgCGUgGUGC-GuGGCGGCg -3'
miRNA:   3'- -UCCGGCGGCa--------GCGgCGCGaC-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 27491 0.71 0.098961
Target:  5'- cGGCCGCCGggCGCgGUGCgccaGGcgcGCGACg -3'
miRNA:   3'- uCCGGCGGCa-GCGgCGCGa---CC---CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 25829 0.66 0.219305
Target:  5'- cGGGCCGCCGUUGgCGCcggucaguuccauGCUGGu---- -3'
miRNA:   3'- -UCCGGCGGCAGCgGCG-------------CGACCcguug -5'
26453 3' -64.4 NC_005357.1 + 25727 0.7 0.11011
Target:  5'- gGGGUCGUCGUCcucaccggcggcaGCaCGCugggcgcgcuGCUGGGCGGCg -3'
miRNA:   3'- -UCCGGCGGCAG-------------CG-GCG----------CGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 25668 0.68 0.165225
Target:  5'- -cGCCGCCGUgGuuGCcacugcCUGGGCcGCa -3'
miRNA:   3'- ucCGGCGGCAgCggCGc-----GACCCGuUG- -5'
26453 3' -64.4 NC_005357.1 + 25150 0.8 0.019821
Target:  5'- cGG-CGCCGggcgCGCUGCGCUGGGUGGCg -3'
miRNA:   3'- uCCgGCGGCa---GCGGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 25020 0.68 0.164354
Target:  5'- cGGGuuGCCGUCcgagucaaaccacguGUCGCGCgauccgccguuaccaUcGGGCAGCa -3'
miRNA:   3'- -UCCggCGGCAG---------------CGGCGCG---------------A-CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 24621 0.78 0.028744
Target:  5'- cGGCCucGCCaUCGCCGCGCUGcGCGACc -3'
miRNA:   3'- uCCGG--CGGcAGCGGCGCGACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 24505 0.67 0.18837
Target:  5'- -uGUCGCCGagGCCGCGC-GcGGCAccgACa -3'
miRNA:   3'- ucCGGCGGCagCGGCGCGaC-CCGU---UG- -5'
26453 3' -64.4 NC_005357.1 + 24225 0.7 0.104538
Target:  5'- aAGcGCgcaGCCGUCGagGCGCUGGGCcaGGCg -3'
miRNA:   3'- -UC-CGg--CGGCAGCggCGCGACCCG--UUG- -5'
26453 3' -64.4 NC_005357.1 + 23554 0.67 0.178787
Target:  5'- uGGCCucgGCCGacaUCGCCggcaggugcggGCGggGGGCGACg -3'
miRNA:   3'- uCCGG---CGGC---AGCGG-----------CGCgaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 23236 0.71 0.088638
Target:  5'- cGGCCaCCGaccgCGCCuCGCUGGGgAACa -3'
miRNA:   3'- uCCGGcGGCa---GCGGcGCGACCCgUUG- -5'
26453 3' -64.4 NC_005357.1 + 23159 0.67 0.178787
Target:  5'- gGGcGCCGCCGUUGgCGUcg-GGGCGAg -3'
miRNA:   3'- -UC-CGGCGGCAGCgGCGcgaCCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.