miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 22797 0.66 0.23664
Target:  5'- cGGGCCggucagcaugguGCCGgacuggcccgacuUCGCCGCGCUGc-CGACa -3'
miRNA:   3'- -UCCGG------------CGGC-------------AGCGGCGCGACccGUUG- -5'
26453 3' -64.4 NC_005357.1 + 22070 0.67 0.20359
Target:  5'- cGGGUCGCgGUCGgCGCGCggcucgauGGCGu- -3'
miRNA:   3'- -UCCGGCGgCAGCgGCGCGac------CCGUug -5'
26453 3' -64.4 NC_005357.1 + 21338 0.66 0.219865
Target:  5'- uGGGCCGacaCuuaCGCCGacauGCUGGGCAu- -3'
miRNA:   3'- -UCCGGCg--Gca-GCGGCg---CGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 21227 0.67 0.200463
Target:  5'- cAGGCCGCgcUGUUGaaccagggCGCggacacggcggccaaGCUGGGCAGCg -3'
miRNA:   3'- -UCCGGCG--GCAGCg-------GCG---------------CGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 21146 0.7 0.123093
Target:  5'- uGGCCGCCGUguCCGCGCccUGGuuCAACa -3'
miRNA:   3'- uCCGGCGGCAgcGGCGCG--ACCc-GUUG- -5'
26453 3' -64.4 NC_005357.1 + 20362 0.71 0.096278
Target:  5'- cGGCCGCCGagcaaccCGCUacugGUGC-GGGCAACg -3'
miRNA:   3'- uCCGGCGGCa------GCGG----CGCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 20278 0.69 0.139716
Target:  5'- uGGCCGUCGUUGcCCGCaccaguagcggguuGCUcGGCGGCc -3'
miRNA:   3'- uCCGGCGGCAGC-GGCG--------------CGAcCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 20272 0.67 0.193329
Target:  5'- cGGCCGCgGgCGCUGCcaagaccgaGGGCGACg -3'
miRNA:   3'- uCCGGCGgCaGCGGCGcga------CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 19980 0.66 0.227833
Target:  5'- cAGGCCGCCGauguccgcguagaacUCGCCaacuugcucggcaugGCGCgccugcaucacaGGCAGCa -3'
miRNA:   3'- -UCCGGCGGC---------------AGCGG---------------CGCGac----------CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 18055 0.66 0.21432
Target:  5'- gGGGCCuuaCCGgCGCggggugCGUGCUGGGCcGCc -3'
miRNA:   3'- -UCCGGc--GGCaGCG------GCGCGACCCGuUG- -5'
26453 3' -64.4 NC_005357.1 + 17655 0.68 0.17416
Target:  5'- cGGCCacgaucuugauGgCGUCGgCGgGCUGGGCGuagGCg -3'
miRNA:   3'- uCCGG-----------CgGCAGCgGCgCGACCCGU---UG- -5'
26453 3' -64.4 NC_005357.1 + 16937 0.66 0.230738
Target:  5'- aGGGCacggCGCCGUCcagcagcguGCCGCGUUGGuauggaaGCGAa -3'
miRNA:   3'- -UCCG----GCGGCAG---------CGGCGCGACC-------CGUUg -5'
26453 3' -64.4 NC_005357.1 + 16793 0.66 0.21432
Target:  5'- uGGUCGCCaGUUGCCaguuggucGCGCccaGGCGGCg -3'
miRNA:   3'- uCCGGCGG-CAGCGG--------CGCGac-CCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 16291 0.68 0.148581
Target:  5'- aAGGCUacccgGUCGUCGUCGCGCacGGGaAGCg -3'
miRNA:   3'- -UCCGG-----CGGCAGCGGCGCGa-CCCgUUG- -5'
26453 3' -64.4 NC_005357.1 + 15846 0.66 0.219865
Target:  5'- -cGCCGuCCGU-GUCGUGCUGGuGCcACg -3'
miRNA:   3'- ucCGGC-GGCAgCGGCGCGACC-CGuUG- -5'
26453 3' -64.4 NC_005357.1 + 15688 0.68 0.169193
Target:  5'- cAGGCCGCUaUCGacgaagaaggcguCCGC-CUGGGCAu- -3'
miRNA:   3'- -UCCGGCGGcAGC-------------GGCGcGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 14974 0.71 0.102835
Target:  5'- gAGGCCgGCCagcagcagaUCGCCGCGCagacccugaaagccGGGCAACu -3'
miRNA:   3'- -UCCGG-CGGc--------AGCGGCGCGa-------------CCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 14852 0.71 0.088638
Target:  5'- uGGCgGCCaG-CGCCGCacGCUGGGCGc- -3'
miRNA:   3'- uCCGgCGG-CaGCGGCG--CGACCCGUug -5'
26453 3' -64.4 NC_005357.1 + 14425 0.68 0.17416
Target:  5'- cAGGCgCGCCugcggCaCCGUGUUGGGCGAa -3'
miRNA:   3'- -UCCG-GCGGca---GcGGCGCGACCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 14348 0.73 0.065281
Target:  5'- uGGGCCGCa-UCGCCGacaGCaUGGuGCAGCa -3'
miRNA:   3'- -UCCGGCGgcAGCGGCg--CG-ACC-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.