miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26453 3' -64.4 NC_005357.1 + 41704 0.75 0.047917
Target:  5'- cGGGCCGCUGcgcaaUCGCCGUcagcaggugGCUGGGCuugAGCg -3'
miRNA:   3'- -UCCGGCGGC-----AGCGGCG---------CGACCCG---UUG- -5'
26453 3' -64.4 NC_005357.1 + 41603 0.65 0.241453
Target:  5'- aGGGCCGCCGcguuguuccagaagUUGaCCGCGCUuucGUAGCc -3'
miRNA:   3'- -UCCGGCGGC--------------AGC-GGCGCGAcc-CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 40402 0.66 0.231322
Target:  5'- gAGGCgGCCGguaUGCCgGUGCU-GGUGGCg -3'
miRNA:   3'- -UCCGgCGGCa--GCGG-CGCGAcCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 39849 0.69 0.137116
Target:  5'- aGGGCgGCaagCGcgCGCaCGCGCUGGGCc-- -3'
miRNA:   3'- -UCCGgCG---GCa-GCG-GCGCGACCCGuug -5'
26453 3' -64.4 NC_005357.1 + 38736 0.66 0.208895
Target:  5'- gGGGCaGCgCGUCGCCGUGgUGGauucGCAc- -3'
miRNA:   3'- -UCCGgCG-GCAGCGGCGCgACC----CGUug -5'
26453 3' -64.4 NC_005357.1 + 38387 0.66 0.219865
Target:  5'- uGGCCuGCCGcUCGCCGCGgccGGCu-- -3'
miRNA:   3'- uCCGG-CGGC-AGCGGCGCgacCCGuug -5'
26453 3' -64.4 NC_005357.1 + 37934 0.71 0.096278
Target:  5'- gAGGCCGaaGUCGCCgagGCGCUGcucggugcgccaGGCGAg -3'
miRNA:   3'- -UCCGGCggCAGCGG---CGCGAC------------CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 37341 0.69 0.133478
Target:  5'- cAGGCgGCCGUCGCUGCucacGCccuuGGCGAg -3'
miRNA:   3'- -UCCGgCGGCAGCGGCG----CGac--CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 37185 0.66 0.21432
Target:  5'- cAGGUCgagGCCGUagGCCGCGagcacgUGGcGCAGCa -3'
miRNA:   3'- -UCCGG---CGGCAg-CGGCGCg-----ACC-CGUUG- -5'
26453 3' -64.4 NC_005357.1 + 36760 0.66 0.237238
Target:  5'- -uGUCGCacaGaUCGCCcagcGCGCcGGGCAGCg -3'
miRNA:   3'- ucCGGCGg--C-AGCGG----CGCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 36671 0.72 0.079344
Target:  5'- aAGGCCcuggcgcacucGCUGccCGgCGCGCUGGGCGAUc -3'
miRNA:   3'- -UCCGG-----------CGGCa-GCgGCGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 35240 0.67 0.193329
Target:  5'- cGGGCCGauGUCGCCG-GCcuUGuGCAGCu -3'
miRNA:   3'- -UCCGGCggCAGCGGCgCG--ACcCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 34706 0.68 0.17416
Target:  5'- cGGCCGCCGa-GCgUGCGCUGcaguucaucGGCAAg -3'
miRNA:   3'- uCCGGCGGCagCG-GCGCGAC---------CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 34229 0.71 0.093665
Target:  5'- uGGCCGCCauGUCGCUGaCGaacGGGCAGg -3'
miRNA:   3'- uCCGGCGG--CAGCGGC-GCga-CCCGUUg -5'
26453 3' -64.4 NC_005357.1 + 33143 0.7 0.110411
Target:  5'- uAGGCCGCCGcgUCGCUGCGCgaccCGAUg -3'
miRNA:   3'- -UCCGGCGGC--AGCGGCGCGacccGUUG- -5'
26453 3' -64.4 NC_005357.1 + 32432 0.69 0.138597
Target:  5'- uGGGCgGCCGggGCCucggcggcgaccgcaGCGacCUGGGCGGCg -3'
miRNA:   3'- -UCCGgCGGCagCGG---------------CGC--GACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 30272 0.67 0.18837
Target:  5'- uGGUCGCgcgaGUCGCCGgaaaaCGUcGGGUAGCg -3'
miRNA:   3'- uCCGGCGg---CAGCGGC-----GCGaCCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 30027 0.7 0.103683
Target:  5'- cAGGCCGUCGUgCGCCGCGacgacaagcaccacCUGacuGGCAAg -3'
miRNA:   3'- -UCCGGCGGCA-GCGGCGC--------------GAC---CCGUUg -5'
26453 3' -64.4 NC_005357.1 + 29731 0.7 0.119801
Target:  5'- --aCgGCCG-CGCCcUGCUGGGCAACg -3'
miRNA:   3'- uccGgCGGCaGCGGcGCGACCCGUUG- -5'
26453 3' -64.4 NC_005357.1 + 29540 0.66 0.208895
Target:  5'- uGGCCGCagaGgacacccaCGCCGUGCUcgGGGUAucGCg -3'
miRNA:   3'- uCCGGCGg--Ca-------GCGGCGCGA--CCCGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.