miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 14259 0.68 0.928027
Target:  5'- -gGGCGUGGGCAACggcgugGUCGAUcUGACCa -3'
miRNA:   3'- ugUUGCGUCUGUUG------UAGUUAcGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 27446 0.68 0.928027
Target:  5'- nCAAUGCcGACGcCAUUcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGuuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 5337 0.68 0.928027
Target:  5'- -uGGCGCAGcAUGGCAUCGcgcUGCGugGCCg -3'
miRNA:   3'- ugUUGCGUC-UGUUGUAGUu--ACGC--UGG- -5'
26454 3' -47.7 NC_005357.1 + 38232 0.68 0.921767
Target:  5'- gACGugcuCGCGGcCAACAugcccgccaUCGAgGCGGCCg -3'
miRNA:   3'- -UGUu---GCGUCuGUUGU---------AGUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 32884 0.68 0.921767
Target:  5'- --cGCGCccgacuggaaGGACAACAagAAcUGCGGCCa -3'
miRNA:   3'- uguUGCG----------UCUGUUGUagUU-ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 10062 0.68 0.921767
Target:  5'- aAUAGCGUccgAGGCGuCGUCGggGCGAgCCg -3'
miRNA:   3'- -UGUUGCG---UCUGUuGUAGUuaCGCU-GG- -5'
26454 3' -47.7 NC_005357.1 + 33759 0.68 0.915188
Target:  5'- gGCGGCGCAGcagccgcugcacACAGCGaguaCGGcGCGGCCu -3'
miRNA:   3'- -UGUUGCGUC------------UGUUGUa---GUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 4331 0.68 0.915188
Target:  5'- cACGAUGguGcCAGCcUUGAUGCuGGCCg -3'
miRNA:   3'- -UGUUGCguCuGUUGuAGUUACG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 621 0.68 0.915188
Target:  5'- aGCAGCGCcguGGACAcggcguccgGCGUCGAgucgGUGcCCa -3'
miRNA:   3'- -UGUUGCG---UCUGU---------UGUAGUUa---CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 39696 0.68 0.915188
Target:  5'- aGCAGCGcCGGGCcGCGcUCAA-GCGuCCg -3'
miRNA:   3'- -UGUUGC-GUCUGuUGU-AGUUaCGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 38879 0.68 0.90829
Target:  5'- uGCGGCGCGGuuGGCGggacugCGcgguGUGCGGCUg -3'
miRNA:   3'- -UGUUGCGUCugUUGUa-----GU----UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 12622 0.68 0.90829
Target:  5'- cCGACGCGcuCGGCAUCGcUGCuGCCg -3'
miRNA:   3'- uGUUGCGUcuGUUGUAGUuACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 9336 0.68 0.92431
Target:  5'- cGCGGCGgGcGGCGGCAUCcuuuugcaguugcuuGAugaUGCGGCCg -3'
miRNA:   3'- -UGUUGCgU-CUGUUGUAG---------------UU---ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37074 0.69 0.893551
Target:  5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3'
miRNA:   3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 19046 0.69 0.88572
Target:  5'- aGCGGcCGCcGGCGGCGUCGAUcaGCGugUc -3'
miRNA:   3'- -UGUU-GCGuCUGUUGUAGUUA--CGCugG- -5'
26454 3' -47.7 NC_005357.1 + 35175 0.69 0.877587
Target:  5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3'
miRNA:   3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 13390 0.69 0.877587
Target:  5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3'
miRNA:   3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 2375 0.69 0.877587
Target:  5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3'
miRNA:   3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5'
26454 3' -47.7 NC_005357.1 + 9513 0.69 0.877587
Target:  5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3'
miRNA:   3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 3564 0.69 0.88572
Target:  5'- cGCAGCaGCGGGCugggcguACAcCGAUccGCGGCCg -3'
miRNA:   3'- -UGUUG-CGUCUGu------UGUaGUUA--CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.