miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 20607 0.66 0.958503
Target:  5'- cCuuCGcCAGGCGGCGUCGcaggucgGUGuCGGCCu -3'
miRNA:   3'- uGuuGC-GUCUGUUGUAGU-------UAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 21454 0.71 0.812962
Target:  5'- uGCGGCGgGGGCGGCAg-GAUGuUGGCCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUagUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 21805 0.72 0.759998
Target:  5'- -gAGCGCAGGcCGACAcCGAccUGCGACg -3'
miRNA:   3'- ugUUGCGUCU-GUUGUaGUU--ACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 22295 0.7 0.831737
Target:  5'- cACGGCGUcgaagucGGGCAGCA-CGAUGCugcuGGCCg -3'
miRNA:   3'- -UGUUGCG-------UCUGUUGUaGUUACG----CUGG- -5'
26454 3' -47.7 NC_005357.1 + 23097 0.66 0.966786
Target:  5'- cCGACGCcaacGGCGGCGccCAcgGCGACa -3'
miRNA:   3'- uGUUGCGu---CUGUUGUa-GUuaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 23193 0.66 0.958926
Target:  5'- gACAGCaGCAGGuCGGCcucGUCGGUGaauuCGGCCu -3'
miRNA:   3'- -UGUUG-CGUCU-GUUG---UAGUUAC----GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 23251 0.66 0.958926
Target:  5'- uCGACGCcGGCGGCA-CGGgcaGCGACa -3'
miRNA:   3'- uGUUGCGuCUGUUGUaGUUa--CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 23515 0.69 0.88572
Target:  5'- cCAGCGCGGGCGccgaccuCAUCGAccUGaUGACCc -3'
miRNA:   3'- uGUUGCGUCUGUu------GUAGUU--AC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 23536 0.67 0.949876
Target:  5'- gGCGGCGCAcGCG--GUCGAUGgccuCGGCCg -3'
miRNA:   3'- -UGUUGCGUcUGUugUAGUUAC----GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 23651 0.71 0.781736
Target:  5'- cCGGCgGCGGGCAGCAacugCAccagGCGACCc -3'
miRNA:   3'- uGUUG-CGUCUGUUGUa---GUua--CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 24241 0.67 0.949876
Target:  5'- aACGA-GguGACAGCAUgGAaGUGAUCg -3'
miRNA:   3'- -UGUUgCguCUGUUGUAgUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 24557 0.7 0.851464
Target:  5'- cGCAGCGCGG-CGAUggCGAgGcCGGCCa -3'
miRNA:   3'- -UGUUGCGUCuGUUGuaGUUaC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 25057 0.68 0.915188
Target:  5'- cGCGAUGCAGGCAuACcuGUCGcagGCGAUg -3'
miRNA:   3'- -UGUUGCGUCUGU-UG--UAGUua-CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 25270 0.69 0.88492
Target:  5'- -gGGCGCAucGACGACGUgaaguacCAAaGCGGCCu -3'
miRNA:   3'- ugUUGCGU--CUGUUGUA-------GUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26266 0.72 0.726288
Target:  5'- cCGACGCGGuaacgcccacCAcCAUCAgcGUGCGGCCg -3'
miRNA:   3'- uGUUGCGUCu---------GUuGUAGU--UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26400 0.68 0.901076
Target:  5'- uACAACugGCAGGCcaacgguuuCGUCAccgGCGACCu -3'
miRNA:   3'- -UGUUG--CGUCUGuu-------GUAGUua-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26592 0.66 0.972577
Target:  5'- cACGACaCGGACGGCGUguucgaguccugcgCGGUGgUGGCCg -3'
miRNA:   3'- -UGUUGcGUCUGUUGUA--------------GUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26732 0.67 0.939586
Target:  5'- cCAG-GCGGACGccuucuuCGUCGAUaGCGGCCu -3'
miRNA:   3'- uGUUgCGUCUGUu------GUAGUUA-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26882 0.73 0.703248
Target:  5'- aGCAAgGCuGACGGCA---GUGUGACCu -3'
miRNA:   3'- -UGUUgCGuCUGUUGUaguUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 27161 0.75 0.561961
Target:  5'- gGCGACaGCGGGCAACuGUUuGUGCGGCa -3'
miRNA:   3'- -UGUUG-CGUCUGUUG-UAGuUACGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.