Results 41 - 60 of 137 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 14568 | 0.72 | 0.737653 |
Target: 5'- gGCgAGCGCGGACAcguucuugaGCAgCGGcGCGGCCg -3' miRNA: 3'- -UG-UUGCGUCUGU---------UGUaGUUaCGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 14617 | 0.67 | 0.933966 |
Target: 5'- gGCAGCGCGcgcGAgGACGUgc-UGCGGCUg -3' miRNA: 3'- -UGUUGCGU---CUgUUGUAguuACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 14745 | 0.66 | 0.966786 |
Target: 5'- gGCAguacGCGCAGcauuggcgcGCAGCGugUCGGUGuCGAUCu -3' miRNA: 3'- -UGU----UGCGUC---------UGUUGU--AGUUAC-GCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 14970 | 0.68 | 0.921767 |
Target: 5'- gGCGGCGCGcuGGCAuaccaGCGcCAGggccUGCGGCCg -3' miRNA: 3'- -UGUUGCGU--CUGU-----UGUaGUU----ACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 15058 | 0.66 | 0.973207 |
Target: 5'- -uGAUGCGGGCAAUGUucgacugaaauugCAGgcugcuuugcUGCGACCg -3' miRNA: 3'- ugUUGCGUCUGUUGUA-------------GUU----------ACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 16251 | 0.7 | 0.84221 |
Target: 5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3' miRNA: 3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 16274 | 0.7 | 0.860451 |
Target: 5'- cGCAuCGCAGACGGCGagcCGcUGCG-CCa -3' miRNA: 3'- -UGUuGCGUCUGUUGUa--GUuACGCuGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 17005 | 0.7 | 0.822948 |
Target: 5'- uGCAGCGCAuGACGgaaAUCAuggGCGGCa -3' miRNA: 3'- -UGUUGCGU-CUGUug-UAGUua-CGCUGg -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 17176 | 0.67 | 0.949876 |
Target: 5'- aGCAGCGCGaGCAACA--GGUGCG-CUu -3' miRNA: 3'- -UGUUGCGUcUGUUGUagUUACGCuGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 17644 | 0.68 | 0.90829 |
Target: 5'- uCAACGCGGGCA---UCGAgGaCGACCc -3' miRNA: 3'- uGUUGCGUCUGUuguAGUUaC-GCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 17699 | 0.7 | 0.84221 |
Target: 5'- gGCcGCGCAGGCGcgGUgGAaGCGGCCc -3' miRNA: 3'- -UGuUGCGUCUGUugUAgUUaCGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 17956 | 0.77 | 0.475987 |
Target: 5'- -uGGCGCAGGCAagcagcaggucgucgGCGUCAAUGUcGCCg -3' miRNA: 3'- ugUUGCGUCUGU---------------UGUAGUUACGcUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 18148 | 0.66 | 0.966786 |
Target: 5'- gGCucGCGCAGcuugccgaaAUAGCccuguuUCAGUGCGAUCa -3' miRNA: 3'- -UGu-UGCGUC---------UGUUGu-----AGUUACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 18465 | 0.74 | 0.649215 |
Target: 5'- cGCGGCGCcGGCGGCGUCGgccgauucguccaccGUGaUGACCa -3' miRNA: 3'- -UGUUGCGuCUGUUGUAGU---------------UAC-GCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 18713 | 0.72 | 0.747776 |
Target: 5'- aGCAGCGCAucgguacGGCGGCAcgggaugccgUCGAacGCGACCa -3' miRNA: 3'- -UGUUGCGU-------CUGUUGU----------AGUUa-CGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 18969 | 0.72 | 0.748894 |
Target: 5'- gGCGAUGCGGACGACGUaacgcCAGUcGCGcagggucagGCCg -3' miRNA: 3'- -UGUUGCGUCUGUUGUA-----GUUA-CGC---------UGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 19046 | 0.69 | 0.88572 |
Target: 5'- aGCGGcCGCcGGCGGCGUCGAUcaGCGugUc -3' miRNA: 3'- -UGUU-GCGuCUGUUGUAGUUA--CGCugG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 19240 | 0.67 | 0.933387 |
Target: 5'- cGCGGCGuCAGGCccaugaacuucucGGCGUCGAUGCuggaaucGCCg -3' miRNA: 3'- -UGUUGC-GUCUG-------------UUGUAGUUACGc------UGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 19609 | 0.68 | 0.917858 |
Target: 5'- gGCAGCGCGG-CGAaGUCGggccaguccggcaccAUGCuGACCg -3' miRNA: 3'- -UGUUGCGUCuGUUgUAGU---------------UACG-CUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 20323 | 0.71 | 0.802756 |
Target: 5'- uGCGAUGCGGGCuggccuucaGugGUCGuUGCGGCUu -3' miRNA: 3'- -UGUUGCGUCUG---------UugUAGUuACGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home