miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 31284 0.66 0.973518
Target:  5'- cCGACGU-GGCAGCGaagCcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUUGUa--GuuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 31266 0.73 0.6916
Target:  5'- cCAGCGCAcGCAACGUgCGcagGCGGCCc -3'
miRNA:   3'- uGUUGCGUcUGUUGUA-GUua-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 30926 0.73 0.6916
Target:  5'- cCAGCGCAGGCGcgcccuuuGCGgugUCGcagGCGACCa -3'
miRNA:   3'- uGUUGCGUCUGU--------UGU---AGUua-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 30577 0.66 0.958926
Target:  5'- -uGGCGCGGGguucgcccaggcCAACcgCGGcGCGGCCg -3'
miRNA:   3'- ugUUGCGUCU------------GUUGuaGUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 30467 0.69 0.893551
Target:  5'- gACAACGUGGACAACA------UGACCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUaguuacGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 30009 0.72 0.726288
Target:  5'- gACAGCGCcaccaaGGACGGCAUCAA---GGCCg -3'
miRNA:   3'- -UGUUGCG------UCUGUUGUAGUUacgCUGG- -5'
26454 3' -47.7 NC_005357.1 + 29967 0.75 0.573636
Target:  5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3'
miRNA:   3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 29791 0.69 0.893551
Target:  5'- cCGACGCcaaaGGACGGCAgcagCGAUGcCGAgCg -3'
miRNA:   3'- uGUUGCG----UCUGUUGUa---GUUAC-GCUgG- -5'
26454 3' -47.7 NC_005357.1 + 29284 0.66 0.966786
Target:  5'- gACGugGUAGGCGACGaac-UGCuGGCCc -3'
miRNA:   3'- -UGUugCGUCUGUUGUaguuACG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 29242 0.66 0.970288
Target:  5'- uACAACGCcGGCcaagGGCGccCAGcGCGGCCg -3'
miRNA:   3'- -UGUUGCGuCUG----UUGUa-GUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 28874 0.67 0.949876
Target:  5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3'
miRNA:   3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 28815 0.67 0.954553
Target:  5'- aGCAGC-CAGcGCGcCGUCGucggguUGCGGCCg -3'
miRNA:   3'- -UGUUGcGUC-UGUuGUAGUu-----ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 28744 0.69 0.88572
Target:  5'- -gGACGCcGACGACAUCcucacGGUGCGcggucauaucACCa -3'
miRNA:   3'- ugUUGCGuCUGUUGUAG-----UUACGC----------UGG- -5'
26454 3' -47.7 NC_005357.1 + 28139 0.7 0.822948
Target:  5'- aACGACGUGGGCcGCAUCGccgacagcaugGUGCagcaGGCCa -3'
miRNA:   3'- -UGUUGCGUCUGuUGUAGU-----------UACG----CUGG- -5'
26454 3' -47.7 NC_005357.1 + 27596 0.66 0.960592
Target:  5'- gGCGGCGcCAGAUGGCGUggucgucgcccuugaCGAUG-GGCCg -3'
miRNA:   3'- -UGUUGC-GUCUGUUGUA---------------GUUACgCUGG- -5'
26454 3' -47.7 NC_005357.1 + 27446 0.68 0.928027
Target:  5'- nCAAUGCcGACGcCAUUcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGuuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 27413 0.71 0.781736
Target:  5'- cCAACGCGGACAcCAUCGAgucuauugGCaacGCCa -3'
miRNA:   3'- uGUUGCGUCUGUuGUAGUUa-------CGc--UGG- -5'
26454 3' -47.7 NC_005357.1 + 27161 0.75 0.561961
Target:  5'- gGCGACaGCGGGCAACuGUUuGUGCGGCa -3'
miRNA:   3'- -UGUUG-CGUCUGUUG-UAGuUACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 26882 0.73 0.703248
Target:  5'- aGCAAgGCuGACGGCA---GUGUGACCu -3'
miRNA:   3'- -UGUUgCGuCUGUUGUaguUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26732 0.67 0.939586
Target:  5'- cCAG-GCGGACGccuucuuCGUCGAUaGCGGCCu -3'
miRNA:   3'- uGUUgCGUCUGUu------GUAGUUA-CGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.