miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 4240 0.75 0.573636
Target:  5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3'
miRNA:   3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13020 0.77 0.438617
Target:  5'- cGCAGCGCAGugGCGACGgccucgUCAucgcguugcuugaGUGCGGCCg -3'
miRNA:   3'- -UGUUGCGUC--UGUUGU------AGU-------------UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 21454 0.71 0.812962
Target:  5'- uGCGGCGgGGGCGGCAg-GAUGuUGGCCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUagUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 3744 0.7 0.822948
Target:  5'- -gGugGUGGGC-ACGUCGGUGCcGCCg -3'
miRNA:   3'- ugUugCGUCUGuUGUAGUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 22295 0.7 0.831737
Target:  5'- cACGGCGUcgaagucGGGCAGCA-CGAUGCugcuGGCCg -3'
miRNA:   3'- -UGUUGCG-------UCUGUUGUaGUUACG----CUGG- -5'
26454 3' -47.7 NC_005357.1 + 38879 0.68 0.90829
Target:  5'- uGCGGCGCGGuuGGCGggacugCGcgguGUGCGGCUg -3'
miRNA:   3'- -UGUUGCGUCugUUGUa-----GU----UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 12622 0.68 0.90829
Target:  5'- cCGACGCGcuCGGCAUCGcUGCuGCCg -3'
miRNA:   3'- uGUUGCGUcuGUUGUAGUuACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 37074 0.69 0.893551
Target:  5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3'
miRNA:   3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 19046 0.69 0.88572
Target:  5'- aGCGGcCGCcGGCGGCGUCGAUcaGCGugUc -3'
miRNA:   3'- -UGUU-GCGuCUGUUGUAGUUA--CGCugG- -5'
26454 3' -47.7 NC_005357.1 + 3564 0.69 0.88572
Target:  5'- cGCAGCaGCGGGCugggcguACAcCGAUccGCGGCCg -3'
miRNA:   3'- -UGUUG-CGUCUGu------UGUaGUUA--CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 35175 0.69 0.877587
Target:  5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3'
miRNA:   3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 13390 0.69 0.877587
Target:  5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3'
miRNA:   3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 16251 0.7 0.84221
Target:  5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3'
miRNA:   3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 24557 0.7 0.851464
Target:  5'- cGCAGCGCGG-CGAUggCGAgGcCGGCCa -3'
miRNA:   3'- -UGUUGCGUCuGUUGuaGUUaC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 4452 0.69 0.869162
Target:  5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3'
miRNA:   3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5'
26454 3' -47.7 NC_005357.1 + 9513 0.69 0.877587
Target:  5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3'
miRNA:   3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 2375 0.69 0.877587
Target:  5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3'
miRNA:   3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5'
26454 3' -47.7 NC_005357.1 + 36447 0.66 0.973518
Target:  5'- aGCGACGCAGACggUGUgGAauccaccuUGACCc -3'
miRNA:   3'- -UGUUGCGUCUGuuGUAgUUac------GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37364 0.83 0.228122
Target:  5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5'
26454 3' -47.7 NC_005357.1 + 8570 0.79 0.360878
Target:  5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3'
miRNA:   3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.