miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 37669 0.69 0.893551
Target:  5'- gGCgAACGCcGAgAACAUCGcgGCcguGGCCg -3'
miRNA:   3'- -UG-UUGCGuCUgUUGUAGUuaCG---CUGG- -5'
26454 3' -47.7 NC_005357.1 + 31357 0.71 0.801724
Target:  5'- cGCGACcCGGACAcguucgaGCAguucgucgcCAAUGCGGCCg -3'
miRNA:   3'- -UGUUGcGUCUGU-------UGUa--------GUUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 27161 0.75 0.561961
Target:  5'- gGCGACaGCGGGCAACuGUUuGUGCGGCa -3'
miRNA:   3'- -UGUUG-CGUCUGUUG-UAGuUACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 30467 0.69 0.893551
Target:  5'- gACAACGUGGACAACA------UGACCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUaguuacGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37810 0.76 0.538815
Target:  5'- gGCAGCGCGGGcCAACAUUGGccugGCuGACCu -3'
miRNA:   3'- -UGUUGCGUCU-GUUGUAGUUa---CG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 24241 0.67 0.949876
Target:  5'- aACGA-GguGACAGCAUgGAaGUGAUCg -3'
miRNA:   3'- -UGUUgCguCUGUUGUAgUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 36837 0.74 0.608955
Target:  5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3'
miRNA:   3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 17176 0.67 0.949876
Target:  5'- aGCAGCGCGaGCAACA--GGUGCG-CUu -3'
miRNA:   3'- -UGUUGCGUcUGUUGUagUUACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 37571 0.67 0.944372
Target:  5'- gGCAACGaccugacCGGGCAACcuauggucAUCGAcuacgGCGACCu -3'
miRNA:   3'- -UGUUGC-------GUCUGUUG--------UAGUUa----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 40340 0.67 0.933387
Target:  5'- -gGGCGCgcuacauGGACGACAUCGuggugcuggGCGACg -3'
miRNA:   3'- ugUUGCG-------UCUGUUGUAGUua-------CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 5337 0.68 0.928027
Target:  5'- -uGGCGCAGcAUGGCAUCGcgcUGCGugGCCg -3'
miRNA:   3'- ugUUGCGUC-UGUUGUAGUu--ACGC--UGG- -5'
26454 3' -47.7 NC_005357.1 + 25057 0.68 0.915188
Target:  5'- cGCGAUGCAGGCAuACcuGUCGcagGCGAUg -3'
miRNA:   3'- -UGUUGCGUCUGU-UG--UAGUua-CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 26400 0.68 0.901076
Target:  5'- uACAACugGCAGGCcaacgguuuCGUCAccgGCGACCu -3'
miRNA:   3'- -UGUUG--CGUCUGuu-------GUAGUua-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 23515 0.69 0.88572
Target:  5'- cCAGCGCGGGCGccgaccuCAUCGAccUGaUGACCc -3'
miRNA:   3'- uGUUGCGUCUGUu------GUAGUU--AC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 1105 0.69 0.869162
Target:  5'- gGCGGCgGUAGGCGGCAaaggcuugccgUCGAUcaugagcaGCGGCCg -3'
miRNA:   3'- -UGUUG-CGUCUGUUGU-----------AGUUA--------CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13578 0.7 0.851464
Target:  5'- cGCGGCGCugGGACAGCuucggCAAgucCGGCCg -3'
miRNA:   3'- -UGUUGCG--UCUGUUGua---GUUac-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 17005 0.7 0.822948
Target:  5'- uGCAGCGCAuGACGgaaAUCAuggGCGGCa -3'
miRNA:   3'- -UGUUGCGU-CUGUug-UAGUua-CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 38083 0.72 0.759998
Target:  5'- gGCAACGCAacGGcCAGCAUCAAggcugGC-ACCa -3'
miRNA:   3'- -UGUUGCGU--CU-GUUGUAGUUa----CGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 30009 0.72 0.726288
Target:  5'- gACAGCGCcaccaaGGACGGCAUCAA---GGCCg -3'
miRNA:   3'- -UGUUGCG------UCUGUUGUAGUUacgCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37013 0.73 0.679885
Target:  5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3'
miRNA:   3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.