miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 37154 0.71 0.802756
Target:  5'- gACAACGCc-GCgAACAUCAAcacgGUGGCCg -3'
miRNA:   3'- -UGUUGCGucUG-UUGUAGUUa---CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 27413 0.71 0.781736
Target:  5'- cCAACGCGGACAcCAUCGAgucuauugGCaacGCCa -3'
miRNA:   3'- uGUUGCGUCUGUuGUAGUUa-------CGc--UGG- -5'
26454 3' -47.7 NC_005357.1 + 37253 0.74 0.620789
Target:  5'- gACGACguGCAGGCGgugGCAggCAAUGCGGCa -3'
miRNA:   3'- -UGUUG--CGUCUGU---UGUa-GUUACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 5441 0.77 0.471635
Target:  5'- gGCGGCGUGGGCGAgGUCGGUauCGACCa -3'
miRNA:   3'- -UGUUGCGUCUGUUgUAGUUAc-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 28744 0.69 0.88572
Target:  5'- -gGACGCcGACGACAUCcucacGGUGCGcggucauaucACCa -3'
miRNA:   3'- ugUUGCGuCUGUUGUAG-----UUACGC----------UGG- -5'
26454 3' -47.7 NC_005357.1 + 8448 0.7 0.860451
Target:  5'- uCGGCGCGauGuCGGCGUCGAgGUGGCCu -3'
miRNA:   3'- uGUUGCGU--CuGUUGUAGUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 21805 0.72 0.759998
Target:  5'- -gAGCGCAGGcCGACAcCGAccUGCGACg -3'
miRNA:   3'- ugUUGCGUCU-GUUGUaGUU--ACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 8570 0.79 0.360878
Target:  5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3'
miRNA:   3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13578 0.7 0.851464
Target:  5'- cGCGGCGCugGGACAGCuucggCAAgucCGGCCg -3'
miRNA:   3'- -UGUUGCG--UCUGUUGua---GUUac-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37364 0.83 0.228122
Target:  5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5'
26454 3' -47.7 NC_005357.1 + 38083 0.72 0.759998
Target:  5'- gGCAACGCAacGGcCAGCAUCAAggcugGC-ACCa -3'
miRNA:   3'- -UGUUGCGU--CU-GUUGUAGUUa----CGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 17005 0.7 0.822948
Target:  5'- uGCAGCGCAuGACGgaaAUCAuggGCGGCa -3'
miRNA:   3'- -UGUUGCGU-CUGUug-UAGUua-CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 26266 0.72 0.726288
Target:  5'- cCGACGCGGuaacgcccacCAcCAUCAgcGUGCGGCCg -3'
miRNA:   3'- uGUUGCGUCu---------GUuGUAGU--UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37013 0.73 0.679885
Target:  5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3'
miRNA:   3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 37410 0.75 0.578323
Target:  5'- uCAACGCAGuagucgguaaugccaACAAUAUCAAUGCGGu- -3'
miRNA:   3'- uGUUGCGUC---------------UGUUGUAGUUACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 17956 0.77 0.475987
Target:  5'- -uGGCGCAGGCAagcagcaggucgucgGCGUCAAUGUcGCCg -3'
miRNA:   3'- ugUUGCGUCUGU---------------UGUAGUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 13720 0.69 0.893551
Target:  5'- cGCGuGCGCcGACAGCAUCGAccuUGUGAa- -3'
miRNA:   3'- -UGU-UGCGuCUGUUGUAGUU---ACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 29791 0.69 0.893551
Target:  5'- cCGACGCcaaaGGACGGCAgcagCGAUGcCGAgCg -3'
miRNA:   3'- uGUUGCG----UCUGUUGUa---GUUAC-GCUgG- -5'
26454 3' -47.7 NC_005357.1 + 25270 0.69 0.88492
Target:  5'- -gGGCGCAucGACGACGUgaaguacCAAaGCGGCCu -3'
miRNA:   3'- ugUUGCGU--CUGUUGUA-------GUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 16274 0.7 0.860451
Target:  5'- cGCAuCGCAGACGGCGagcCGcUGCG-CCa -3'
miRNA:   3'- -UGUuGCGUCUGUUGUa--GUuACGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.