miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 8448 0.7 0.860451
Target:  5'- uCGGCGCGauGuCGGCGUCGAgGUGGCCu -3'
miRNA:   3'- uGUUGCGU--CuGUUGUAGUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 8570 0.79 0.360878
Target:  5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3'
miRNA:   3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 8576 0.67 0.949876
Target:  5'- gGCGuCGUAGGCcGCGc--GUGCGGCCu -3'
miRNA:   3'- -UGUuGCGUCUGuUGUaguUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 9336 0.68 0.92431
Target:  5'- cGCGGCGgGcGGCGGCAUCcuuuugcaguugcuuGAugaUGCGGCCg -3'
miRNA:   3'- -UGUUGCgU-CUGUUGUAG---------------UU---ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 9346 0.66 0.966786
Target:  5'- -gGAUGUAGGCcgccGCGUCGcugcGCGACCc -3'
miRNA:   3'- ugUUGCGUCUGu---UGUAGUua--CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 9513 0.69 0.877587
Target:  5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3'
miRNA:   3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 9563 0.67 0.954553
Target:  5'- -gGGCGC-GACAAUcUCGGcgccgaccgucUGCGGCCa -3'
miRNA:   3'- ugUUGCGuCUGUUGuAGUU-----------ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 9766 0.66 0.958926
Target:  5'- gGCuucACGuCGGGCAGCuUCGcgGCG-CCg -3'
miRNA:   3'- -UGu--UGC-GUCUGUUGuAGUuaCGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 9852 0.66 0.966786
Target:  5'- cACAGCGUcGGCGguguccugauACGUCGGaGCGGCa -3'
miRNA:   3'- -UGUUGCGuCUGU----------UGUAGUUaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 10062 0.68 0.921767
Target:  5'- aAUAGCGUccgAGGCGuCGUCGggGCGAgCCg -3'
miRNA:   3'- -UGUUGCG---UCUGUuGUAGUuaCGCU-GG- -5'
26454 3' -47.7 NC_005357.1 + 11355 0.66 0.96995
Target:  5'- uGCAguACGguGGCGaccugcucgcccgGCAccUCGGUGgCGACCu -3'
miRNA:   3'- -UGU--UGCguCUGU-------------UGU--AGUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 12622 0.68 0.90829
Target:  5'- cCGACGCGcuCGGCAUCGcUGCuGCCg -3'
miRNA:   3'- uGUUGCGUcuGUUGUAGUuACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 13020 0.77 0.438617
Target:  5'- cGCAGCGCAGugGCGACGgccucgUCAucgcguugcuugaGUGCGGCCg -3'
miRNA:   3'- -UGUUGCGUC--UGUUGU------AGU-------------UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13390 0.69 0.877587
Target:  5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3'
miRNA:   3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 13469 0.66 0.966786
Target:  5'- cGCggUGuCGGGCAugAccugggCGAUGcCGACCg -3'
miRNA:   3'- -UGuuGC-GUCUGUugUa-----GUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13578 0.7 0.851464
Target:  5'- cGCGGCGCugGGACAGCuucggCAAgucCGGCCg -3'
miRNA:   3'- -UGUUGCG--UCUGUUGua---GUUac-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13613 0.71 0.792343
Target:  5'- aACcuUGCcGACAGCAUCGGUaGCGGCa -3'
miRNA:   3'- -UGuuGCGuCUGUUGUAGUUA-CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 13720 0.69 0.893551
Target:  5'- cGCGuGCGCcGACAGCAUCGAccuUGUGAa- -3'
miRNA:   3'- -UGU-UGCGuCUGUUGUAGUU---ACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 14259 0.68 0.928027
Target:  5'- -gGGCGUGGGCAACggcgugGUCGAUcUGACCa -3'
miRNA:   3'- ugUUGCGUCUGUUG------UAGUUAcGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 14407 0.66 0.970288
Target:  5'- gGCGACGCcGACAugAUCGGcuucuuccaGCG-CCu -3'
miRNA:   3'- -UGUUGCGuCUGUugUAGUUa--------CGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.