miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 621 0.68 0.915188
Target:  5'- aGCAGCGCcguGGACAcggcguccgGCGUCGAgucgGUGcCCa -3'
miRNA:   3'- -UGUUGCG---UCUGU---------UGUAGUUa---CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 1105 0.69 0.869162
Target:  5'- gGCGGCgGUAGGCGGCAaaggcuugccgUCGAUcaugagcaGCGGCCg -3'
miRNA:   3'- -UGUUG-CGUCUGUUGU-----------AGUUA--------CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 1460 0.66 0.966786
Target:  5'- gACGGCGCGGuCGGCGgccUCcugGCaGGCCg -3'
miRNA:   3'- -UGUUGCGUCuGUUGU---AGuuaCG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 2375 0.69 0.877587
Target:  5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3'
miRNA:   3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5'
26454 3' -47.7 NC_005357.1 + 3564 0.69 0.88572
Target:  5'- cGCAGCaGCGGGCugggcguACAcCGAUccGCGGCCg -3'
miRNA:   3'- -UGUUG-CGUCUGu------UGUaGUUA--CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 3744 0.7 0.822948
Target:  5'- -gGugGUGGGC-ACGUCGGUGCcGCCg -3'
miRNA:   3'- ugUugCGUCUGuUGUAGUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 4240 0.75 0.573636
Target:  5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3'
miRNA:   3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 4331 0.68 0.915188
Target:  5'- cACGAUGguGcCAGCcUUGAUGCuGGCCg -3'
miRNA:   3'- -UGUUGCguCuGUUGuAGUUACG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 4384 0.67 0.941745
Target:  5'- cGCAGC-CAGGCGcCGUCGcgccgggccuugagcGUGCGGCa -3'
miRNA:   3'- -UGUUGcGUCUGUuGUAGU---------------UACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 4452 0.69 0.869162
Target:  5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3'
miRNA:   3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5'
26454 3' -47.7 NC_005357.1 + 4882 0.66 0.970288
Target:  5'- cCAGCGCGG-CGACG-----GCGGCCu -3'
miRNA:   3'- uGUUGCGUCuGUUGUaguuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 5098 0.68 0.915188
Target:  5'- gGCGGC-CGGccCAGCGUcCGGUGCGGCUg -3'
miRNA:   3'- -UGUUGcGUCu-GUUGUA-GUUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 5146 0.67 0.939586
Target:  5'- uGCcGCGCAGGCGGcCGUCGcUGCucacGCCc -3'
miRNA:   3'- -UGuUGCGUCUGUU-GUAGUuACGc---UGG- -5'
26454 3' -47.7 NC_005357.1 + 5337 0.68 0.928027
Target:  5'- -uGGCGCAGcAUGGCAUCGcgcUGCGugGCCg -3'
miRNA:   3'- ugUUGCGUC-UGUUGUAGUu--ACGC--UGG- -5'
26454 3' -47.7 NC_005357.1 + 5441 0.77 0.471635
Target:  5'- gGCGGCGUGGGCGAgGUCGGUauCGACCa -3'
miRNA:   3'- -UGUUGCGUCUGUUgUAGUUAc-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 5749 0.69 0.88572
Target:  5'- cCAGCGCgccGGGCAGCG--AGUGCG-CCa -3'
miRNA:   3'- uGUUGCG---UCUGUUGUagUUACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 7204 0.72 0.714815
Target:  5'- gACAGCGCGauguccacGGCAGCAUC--UGCG-CCg -3'
miRNA:   3'- -UGUUGCGU--------CUGUUGUAGuuACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 7380 0.66 0.958926
Target:  5'- cCAGCgGCGGGCAc---CGcgGCGACCu -3'
miRNA:   3'- uGUUG-CGUCUGUuguaGUuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 7813 0.66 0.973518
Target:  5'- cACu-CGCuGAUAugGUCGAggcGCGGCUg -3'
miRNA:   3'- -UGuuGCGuCUGUugUAGUUa--CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 8118 0.66 0.963001
Target:  5'- uGCAccGCGCGGcCGGCGUUggUuguggGCGugCg -3'
miRNA:   3'- -UGU--UGCGUCuGUUGUAGuuA-----CGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.