Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 37304 | 1.14 | 0.001999 |
Target: 5'- gACAACGCAGACAACAUCAAUGCGACCg -3' miRNA: 3'- -UGUUGCGUCUGUUGUAGUUACGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 37364 | 0.83 | 0.228122 |
Target: 5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3' miRNA: 3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 8570 | 0.79 | 0.360878 |
Target: 5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3' miRNA: 3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 13020 | 0.77 | 0.438617 |
Target: 5'- cGCAGCGCAGugGCGACGgccucgUCAucgcguugcuugaGUGCGGCCg -3' miRNA: 3'- -UGUUGCGUC--UGUUGU------AGU-------------UACGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 5441 | 0.77 | 0.471635 |
Target: 5'- gGCGGCGUGGGCGAgGUCGGUauCGACCa -3' miRNA: 3'- -UGUUGCGUCUGUUgUAGUUAc-GCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 17956 | 0.77 | 0.475987 |
Target: 5'- -uGGCGCAGGCAagcagcaggucgucgGCGUCAAUGUcGCCg -3' miRNA: 3'- ugUUGCGUCUGU---------------UGUAGUUACGcUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 37810 | 0.76 | 0.538815 |
Target: 5'- gGCAGCGCGGGcCAACAUUGGccugGCuGACCu -3' miRNA: 3'- -UGUUGCGUCU-GUUGUAGUUa---CG-CUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 27161 | 0.75 | 0.561961 |
Target: 5'- gGCGACaGCGGGCAACuGUUuGUGCGGCa -3' miRNA: 3'- -UGUUG-CGUCUGUUG-UAGuUACGCUGg -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 4240 | 0.75 | 0.573636 |
Target: 5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3' miRNA: 3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 29967 | 0.75 | 0.573636 |
Target: 5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3' miRNA: 3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 37410 | 0.75 | 0.578323 |
Target: 5'- uCAACGCAGuagucgguaaugccaACAAUAUCAAUGCGGu- -3' miRNA: 3'- uGUUGCGUC---------------UGUUGUAGUUACGCUgg -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 36837 | 0.74 | 0.608955 |
Target: 5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3' miRNA: 3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 37253 | 0.74 | 0.620789 |
Target: 5'- gACGACguGCAGGCGgugGCAggCAAUGCGGCa -3' miRNA: 3'- -UGUUG--CGUCUGU---UGUa-GUUACGCUGg -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 33869 | 0.74 | 0.620789 |
Target: 5'- uACGACGCccaGGAUGAgGUCGAgcGCGGCCu -3' miRNA: 3'- -UGUUGCG---UCUGUUgUAGUUa-CGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 18465 | 0.74 | 0.649215 |
Target: 5'- cGCGGCGCcGGCGGCGUCGgccgauucguccaccGUGaUGACCa -3' miRNA: 3'- -UGUUGCGuCUGUUGUAGU---------------UAC-GCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 37013 | 0.73 | 0.679885 |
Target: 5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3' miRNA: 3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 30926 | 0.73 | 0.6916 |
Target: 5'- cCAGCGCAGGCGcgcccuuuGCGgugUCGcagGCGACCa -3' miRNA: 3'- uGUUGCGUCUGU--------UGU---AGUua-CGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 31266 | 0.73 | 0.6916 |
Target: 5'- cCAGCGCAcGCAACGUgCGcagGCGGCCc -3' miRNA: 3'- uGUUGCGUcUGUUGUA-GUua-CGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 26882 | 0.73 | 0.703248 |
Target: 5'- aGCAAgGCuGACGGCA---GUGUGACCu -3' miRNA: 3'- -UGUUgCGuCUGUUGUaguUACGCUGG- -5' |
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26454 | 3' | -47.7 | NC_005357.1 | + | 7204 | 0.72 | 0.714815 |
Target: 5'- gACAGCGCGauguccacGGCAGCAUC--UGCG-CCg -3' miRNA: 3'- -UGUUGCGU--------CUGUUGUAGuuACGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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