miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 13390 0.69 0.877587
Target:  5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3'
miRNA:   3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 21454 0.71 0.812962
Target:  5'- uGCGGCGgGGGCGGCAg-GAUGuUGGCCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUagUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 3744 0.7 0.822948
Target:  5'- -gGugGUGGGC-ACGUCGGUGCcGCCg -3'
miRNA:   3'- ugUugCGUCUGuUGUAGUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 22295 0.7 0.831737
Target:  5'- cACGGCGUcgaagucGGGCAGCA-CGAUGCugcuGGCCg -3'
miRNA:   3'- -UGUUGCG-------UCUGUUGUaGUUACG----CUGG- -5'
26454 3' -47.7 NC_005357.1 + 16251 0.7 0.84221
Target:  5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3'
miRNA:   3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 24557 0.7 0.851464
Target:  5'- cGCAGCGCGG-CGAUggCGAgGcCGGCCa -3'
miRNA:   3'- -UGUUGCGUCuGUUGuaGUUaC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 4452 0.69 0.869162
Target:  5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3'
miRNA:   3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5'
26454 3' -47.7 NC_005357.1 + 9513 0.69 0.877587
Target:  5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3'
miRNA:   3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 2375 0.69 0.877587
Target:  5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3'
miRNA:   3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5'
26454 3' -47.7 NC_005357.1 + 20323 0.71 0.802756
Target:  5'- uGCGAUGCGGGCuggccuucaGugGUCGuUGCGGCUu -3'
miRNA:   3'- -UGUUGCGUCUG---------UugUAGUuACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13613 0.71 0.792343
Target:  5'- aACcuUGCcGACAGCAUCGGUaGCGGCa -3'
miRNA:   3'- -UGuuGCGuCUGUUGUAGUUA-CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 23651 0.71 0.781736
Target:  5'- cCGGCgGCGGGCAGCAacugCAccagGCGACCc -3'
miRNA:   3'- uGUUG-CGUCUGUUGUa---GUua--CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 4240 0.75 0.573636
Target:  5'- -aGACGUAGAUGGCguaGUCGGUGcCGGCCg -3'
miRNA:   3'- ugUUGCGUCUGUUG---UAGUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 29967 0.75 0.573636
Target:  5'- cGCGGCGCAcGACGGCcUgGAUGCaGCCg -3'
miRNA:   3'- -UGUUGCGU-CUGUUGuAgUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 18465 0.74 0.649215
Target:  5'- cGCGGCGCcGGCGGCGUCGgccgauucguccaccGUGaUGACCa -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGU---------------UAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26882 0.73 0.703248
Target:  5'- aGCAAgGCuGACGGCA---GUGUGACCu -3'
miRNA:   3'- -UGUUgCGuCUGUUGUaguUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 7204 0.72 0.714815
Target:  5'- gACAGCGCGauguccacGGCAGCAUC--UGCG-CCg -3'
miRNA:   3'- -UGUUGCGU--------CUGUUGUAGuuACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 18713 0.72 0.747776
Target:  5'- aGCAGCGCAucgguacGGCGGCAcgggaugccgUCGAacGCGACCa -3'
miRNA:   3'- -UGUUGCGU-------CUGUUGU----------AGUUa-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 18969 0.72 0.748894
Target:  5'- gGCGAUGCGGACGACGUaacgcCAGUcGCGcagggucagGCCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUA-----GUUA-CGC---------UGG- -5'
26454 3' -47.7 NC_005357.1 + 40315 0.71 0.77095
Target:  5'- aACGGCGCAaucuauaccGACGACAcg---GCGACCa -3'
miRNA:   3'- -UGUUGCGU---------CUGUUGUaguuaCGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.