miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 37304 1.14 0.001999
Target:  5'- gACAACGCAGACAACAUCAAUGCGACCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUAGUUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 21805 0.72 0.759998
Target:  5'- -gAGCGCAGGcCGACAcCGAccUGCGACg -3'
miRNA:   3'- ugUUGCGUCU-GUUGUaGUU--ACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 27413 0.71 0.781736
Target:  5'- cCAACGCGGACAcCAUCGAgucuauugGCaacGCCa -3'
miRNA:   3'- uGUUGCGUCUGUuGUAGUUa-------CGc--UGG- -5'
26454 3' -47.7 NC_005357.1 + 36447 0.66 0.973518
Target:  5'- aGCGACGCAGACggUGUgGAauccaccuUGACCc -3'
miRNA:   3'- -UGUUGCGUCUGuuGUAgUUac------GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 17956 0.77 0.475987
Target:  5'- -uGGCGCAGGCAagcagcaggucgucgGCGUCAAUGUcGCCg -3'
miRNA:   3'- ugUUGCGUCUGU---------------UGUAGUUACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 37810 0.76 0.538815
Target:  5'- gGCAGCGCGGGcCAACAUUGGccugGCuGACCu -3'
miRNA:   3'- -UGUUGCGUCU-GUUGUAGUUa---CG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 37410 0.75 0.578323
Target:  5'- uCAACGCAGuagucgguaaugccaACAAUAUCAAUGCGGu- -3'
miRNA:   3'- uGUUGCGUC---------------UGUUGUAGUUACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 36837 0.74 0.608955
Target:  5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3'
miRNA:   3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37013 0.73 0.679885
Target:  5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3'
miRNA:   3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 14568 0.72 0.737653
Target:  5'- gGCgAGCGCGGACAcguucuugaGCAgCGGcGCGGCCg -3'
miRNA:   3'- -UG-UUGCGUCUGU---------UGUaGUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 31266 0.73 0.6916
Target:  5'- cCAGCGCAcGCAACGUgCGcagGCGGCCc -3'
miRNA:   3'- uGUUGCGUcUGUUGUA-GUua-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37253 0.74 0.620789
Target:  5'- gACGACguGCAGGCGgugGCAggCAAUGCGGCa -3'
miRNA:   3'- -UGUUG--CGUCUGU---UGUa-GUUACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 37364 0.83 0.228122
Target:  5'- gGCAAUGCcGACAACAUCAAUGCaGCg -3'
miRNA:   3'- -UGUUGCGuCUGUUGUAGUUACGcUGg -5'
26454 3' -47.7 NC_005357.1 + 26266 0.72 0.726288
Target:  5'- cCGACGCGGuaacgcccacCAcCAUCAgcGUGCGGCCg -3'
miRNA:   3'- uGUUGCGUCu---------GUuGUAGU--UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 8570 0.79 0.360878
Target:  5'- gGCAGCGaCAGGCGcgACAcgacggUCAcgGCGACCg -3'
miRNA:   3'- -UGUUGC-GUCUGU--UGU------AGUuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 33869 0.74 0.620789
Target:  5'- uACGACGCccaGGAUGAgGUCGAgcGCGGCCu -3'
miRNA:   3'- -UGUUGCG---UCUGUUgUAGUUa-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 30009 0.72 0.726288
Target:  5'- gACAGCGCcaccaaGGACGGCAUCAA---GGCCg -3'
miRNA:   3'- -UGUUGCG------UCUGUUGUAGUUacgCUGG- -5'
26454 3' -47.7 NC_005357.1 + 38083 0.72 0.759998
Target:  5'- gGCAACGCAacGGcCAGCAUCAAggcugGC-ACCa -3'
miRNA:   3'- -UGUUGCGU--CU-GUUGUAGUUa----CGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 5441 0.77 0.471635
Target:  5'- gGCGGCGUGGGCGAgGUCGGUauCGACCa -3'
miRNA:   3'- -UGUUGCGUCUGUUgUAGUUAc-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 27161 0.75 0.561961
Target:  5'- gGCGACaGCGGGCAACuGUUuGUGCGGCa -3'
miRNA:   3'- -UGUUG-CGUCUGUUG-UAGuUACGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.