miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 37074 0.69 0.893551
Target:  5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3'
miRNA:   3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 37013 0.73 0.679885
Target:  5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3'
miRNA:   3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 36865 0.68 0.901076
Target:  5'- nCAGCGUuGGCGcCGUCGAUaccguggcggGCGACCu -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGUUA----------CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 36837 0.74 0.608955
Target:  5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3'
miRNA:   3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 36447 0.66 0.973518
Target:  5'- aGCGACGCAGACggUGUgGAauccaccuUGACCc -3'
miRNA:   3'- -UGUUGCGUCUGuuGUAgUUac------GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 35918 0.67 0.953182
Target:  5'- -gGGCGCAgGACAcaacuacggcaagcGCGUgAAUGCgGGCCu -3'
miRNA:   3'- ugUUGCGU-CUGU--------------UGUAgUUACG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 35175 0.69 0.877587
Target:  5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3'
miRNA:   3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 34663 0.67 0.949876
Target:  5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3'
miRNA:   3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5'
26454 3' -47.7 NC_005357.1 + 34615 0.71 0.792343
Target:  5'- gGCAACGaGGGCAACAUCca-GCG-CCu -3'
miRNA:   3'- -UGUUGCgUCUGUUGUAGuuaCGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 34447 0.7 0.860451
Target:  5'- -gAGCGCGG-CGACAUggaaaccaCGAUGCGcGCCg -3'
miRNA:   3'- ugUUGCGUCuGUUGUA--------GUUACGC-UGG- -5'
26454 3' -47.7 NC_005357.1 + 34379 0.67 0.944372
Target:  5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3'
miRNA:   3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 33911 0.66 0.970288
Target:  5'- gGCAAguuCGCcGGCGACAUCAggGCaucGACg -3'
miRNA:   3'- -UGUU---GCGuCUGUUGUAGUuaCG---CUGg -5'
26454 3' -47.7 NC_005357.1 + 33869 0.74 0.620789
Target:  5'- uACGACGCccaGGAUGAgGUCGAgcGCGGCCu -3'
miRNA:   3'- -UGUUGCG---UCUGUUgUAGUUa-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 33759 0.68 0.915188
Target:  5'- gGCGGCGCAGcagccgcugcacACAGCGaguaCGGcGCGGCCu -3'
miRNA:   3'- -UGUUGCGUC------------UGUUGUa---GUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 33750 0.67 0.944888
Target:  5'- cCAACGCcgaGGugcgcGCGGCAcgCAAUGcCGACCg -3'
miRNA:   3'- uGUUGCG---UC-----UGUUGUa-GUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 33640 0.66 0.966786
Target:  5'- cCGGCGCGGcCGACccAUCG-UGCG-CCg -3'
miRNA:   3'- uGUUGCGUCuGUUG--UAGUuACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 33238 0.66 0.963001
Target:  5'- cGCcgaGCAGGcCAACGUCGAcgGCG-CCa -3'
miRNA:   3'- -UGuugCGUCU-GUUGUAGUUa-CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 33041 0.66 0.973518
Target:  5'- cGCGACauGCAGugGcuGCA-CAAUgcacGCGGCCg -3'
miRNA:   3'- -UGUUG--CGUCugU--UGUaGUUA----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 32884 0.68 0.921767
Target:  5'- --cGCGCccgacuggaaGGACAACAagAAcUGCGGCCa -3'
miRNA:   3'- uguUGCG----------UCUGUUGUagUU-ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 31357 0.71 0.801724
Target:  5'- cGCGACcCGGACAcguucgaGCAguucgucgcCAAUGCGGCCg -3'
miRNA:   3'- -UGUUGcGUCUGU-------UGUa--------GUUACGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.