Results 21 - 40 of 137 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 37074 | 0.69 | 0.893551 |
Target: 5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3' miRNA: 3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 37013 | 0.73 | 0.679885 |
Target: 5'- gGCAACGUGGACAcgguugcugaaaACAUCg--GCGACg -3' miRNA: 3'- -UGUUGCGUCUGU------------UGUAGuuaCGCUGg -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 36865 | 0.68 | 0.901076 |
Target: 5'- nCAGCGUuGGCGcCGUCGAUaccguggcggGCGACCu -3' miRNA: 3'- uGUUGCGuCUGUuGUAGUUA----------CGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 36837 | 0.74 | 0.608955 |
Target: 5'- aACGAgGCGGACAucgACA-CGGUgGCGGCCa -3' miRNA: 3'- -UGUUgCGUCUGU---UGUaGUUA-CGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 36447 | 0.66 | 0.973518 |
Target: 5'- aGCGACGCAGACggUGUgGAauccaccuUGACCc -3' miRNA: 3'- -UGUUGCGUCUGuuGUAgUUac------GCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 35918 | 0.67 | 0.953182 |
Target: 5'- -gGGCGCAgGACAcaacuacggcaagcGCGUgAAUGCgGGCCu -3' miRNA: 3'- ugUUGCGU-CUGU--------------UGUAgUUACG-CUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 35175 | 0.69 | 0.877587 |
Target: 5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3' miRNA: 3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 34663 | 0.67 | 0.949876 |
Target: 5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3' miRNA: 3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 34615 | 0.71 | 0.792343 |
Target: 5'- gGCAACGaGGGCAACAUCca-GCG-CCu -3' miRNA: 3'- -UGUUGCgUCUGUUGUAGuuaCGCuGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 34447 | 0.7 | 0.860451 |
Target: 5'- -gAGCGCGG-CGACAUggaaaccaCGAUGCGcGCCg -3' miRNA: 3'- ugUUGCGUCuGUUGUA--------GUUACGC-UGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 34379 | 0.67 | 0.944372 |
Target: 5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3' miRNA: 3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 33911 | 0.66 | 0.970288 |
Target: 5'- gGCAAguuCGCcGGCGACAUCAggGCaucGACg -3' miRNA: 3'- -UGUU---GCGuCUGUUGUAGUuaCG---CUGg -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 33869 | 0.74 | 0.620789 |
Target: 5'- uACGACGCccaGGAUGAgGUCGAgcGCGGCCu -3' miRNA: 3'- -UGUUGCG---UCUGUUgUAGUUa-CGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 33759 | 0.68 | 0.915188 |
Target: 5'- gGCGGCGCAGcagccgcugcacACAGCGaguaCGGcGCGGCCu -3' miRNA: 3'- -UGUUGCGUC------------UGUUGUa---GUUaCGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 33750 | 0.67 | 0.944888 |
Target: 5'- cCAACGCcgaGGugcgcGCGGCAcgCAAUGcCGACCg -3' miRNA: 3'- uGUUGCG---UC-----UGUUGUa-GUUAC-GCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 33640 | 0.66 | 0.966786 |
Target: 5'- cCGGCGCGGcCGACccAUCG-UGCG-CCg -3' miRNA: 3'- uGUUGCGUCuGUUG--UAGUuACGCuGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 33238 | 0.66 | 0.963001 |
Target: 5'- cGCcgaGCAGGcCAACGUCGAcgGCG-CCa -3' miRNA: 3'- -UGuugCGUCU-GUUGUAGUUa-CGCuGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 33041 | 0.66 | 0.973518 |
Target: 5'- cGCGACauGCAGugGcuGCA-CAAUgcacGCGGCCg -3' miRNA: 3'- -UGUUG--CGUCugU--UGUaGUUA----CGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 32884 | 0.68 | 0.921767 |
Target: 5'- --cGCGCccgacuggaaGGACAACAagAAcUGCGGCCa -3' miRNA: 3'- uguUGCG----------UCUGUUGUagUU-ACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 31357 | 0.71 | 0.801724 |
Target: 5'- cGCGACcCGGACAcguucgaGCAguucgucgcCAAUGCGGCCg -3' miRNA: 3'- -UGUUGcGUCUGU-------UGUa--------GUUACGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home