miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 17699 0.7 0.84221
Target:  5'- gGCcGCGCAGGCGcgGUgGAaGCGGCCc -3'
miRNA:   3'- -UGuUGCGUCUGUugUAgUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 16251 0.7 0.84221
Target:  5'- gAUAugGCGGAUGGCGUUGGccucgcgcGCGGCCa -3'
miRNA:   3'- -UGUugCGUCUGUUGUAGUUa-------CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 24557 0.7 0.851464
Target:  5'- cGCAGCGCGG-CGAUggCGAgGcCGGCCa -3'
miRNA:   3'- -UGUUGCGUCuGUUGuaGUUaC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13578 0.7 0.851464
Target:  5'- cGCGGCGCugGGACAGCuucggCAAgucCGGCCg -3'
miRNA:   3'- -UGUUGCG--UCUGUUGua---GUUac-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 34447 0.7 0.860451
Target:  5'- -gAGCGCGG-CGACAUggaaaccaCGAUGCGcGCCg -3'
miRNA:   3'- ugUUGCGUCuGUUGUA--------GUUACGC-UGG- -5'
26454 3' -47.7 NC_005357.1 + 8448 0.7 0.860451
Target:  5'- uCGGCGCGauGuCGGCGUCGAgGUGGCCu -3'
miRNA:   3'- uGUUGCGU--CuGUUGUAGUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 16274 0.7 0.860451
Target:  5'- cGCAuCGCAGACGGCGagcCGcUGCG-CCa -3'
miRNA:   3'- -UGUuGCGUCUGUUGUa--GUuACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 4452 0.69 0.869162
Target:  5'- cCAGCGguGGCAcCGUC-AUGCacaacGACCg -3'
miRNA:   3'- uGUUGCguCUGUuGUAGuUACG-----CUGG- -5'
26454 3' -47.7 NC_005357.1 + 1105 0.69 0.869162
Target:  5'- gGCGGCgGUAGGCGGCAaaggcuugccgUCGAUcaugagcaGCGGCCg -3'
miRNA:   3'- -UGUUG-CGUCUGUUGU-----------AGUUA--------CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 35175 0.69 0.877587
Target:  5'- cACAAgGCcGGCGACAUCGGcccGCG-CCa -3'
miRNA:   3'- -UGUUgCGuCUGUUGUAGUUa--CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 2375 0.69 0.877587
Target:  5'- cACGugGCAGACGcCcgC-GUGCGuACCc -3'
miRNA:   3'- -UGUugCGUCUGUuGuaGuUACGC-UGG- -5'
26454 3' -47.7 NC_005357.1 + 9513 0.69 0.877587
Target:  5'- cCGugGCGaACAgugGCAUCAugcUGCGGCCc -3'
miRNA:   3'- uGUugCGUcUGU---UGUAGUu--ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 13390 0.69 0.877587
Target:  5'- cCAGCGCgcgguuguAGGCGGCAUCGuUGCGGu- -3'
miRNA:   3'- uGUUGCG--------UCUGUUGUAGUuACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 25270 0.69 0.88492
Target:  5'- -gGGCGCAucGACGACGUgaaguacCAAaGCGGCCu -3'
miRNA:   3'- ugUUGCGU--CUGUUGUA-------GUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 23515 0.69 0.88572
Target:  5'- cCAGCGCGGGCGccgaccuCAUCGAccUGaUGACCc -3'
miRNA:   3'- uGUUGCGUCUGUu------GUAGUU--AC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 3564 0.69 0.88572
Target:  5'- cGCAGCaGCGGGCugggcguACAcCGAUccGCGGCCg -3'
miRNA:   3'- -UGUUG-CGUCUGu------UGUaGUUA--CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 28744 0.69 0.88572
Target:  5'- -gGACGCcGACGACAUCcucacGGUGCGcggucauaucACCa -3'
miRNA:   3'- ugUUGCGuCUGUUGUAG-----UUACGC----------UGG- -5'
26454 3' -47.7 NC_005357.1 + 19046 0.69 0.88572
Target:  5'- aGCGGcCGCcGGCGGCGUCGAUcaGCGugUc -3'
miRNA:   3'- -UGUU-GCGuCUGUUGUAGUUA--CGCugG- -5'
26454 3' -47.7 NC_005357.1 + 5749 0.69 0.88572
Target:  5'- cCAGCGCgccGGGCAGCG--AGUGCG-CCa -3'
miRNA:   3'- uGUUGCG---UCUGUUGUagUUACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 37074 0.69 0.893551
Target:  5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3'
miRNA:   3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.