miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 17176 0.67 0.949876
Target:  5'- aGCAGCGCGaGCAACA--GGUGCG-CUu -3'
miRNA:   3'- -UGUUGCGUcUGUUGUagUUACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 28874 0.67 0.949876
Target:  5'- aACAuCGCcGugGGCAcCGAgucagGCGGCCg -3'
miRNA:   3'- -UGUuGCGuCugUUGUaGUUa----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 34663 0.67 0.949876
Target:  5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3'
miRNA:   3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5'
26454 3' -47.7 NC_005357.1 + 37726 0.67 0.944888
Target:  5'- gGCuACGaGGGCGGCGUCGGUGCcuuucucACCg -3'
miRNA:   3'- -UGuUGCgUCUGUUGUAGUUACGc------UGG- -5'
26454 3' -47.7 NC_005357.1 + 33750 0.67 0.944888
Target:  5'- cCAACGCcgaGGugcgcGCGGCAcgCAAUGcCGACCg -3'
miRNA:   3'- uGUUGCG---UC-----UGUUGUa-GUUAC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37571 0.67 0.944372
Target:  5'- gGCAACGaccugacCGGGCAACcuauggucAUCGAcuacgGCGACCu -3'
miRNA:   3'- -UGUUGC-------GUCUGUUG--------UAGUUa----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 34379 0.67 0.944372
Target:  5'- -gGGCGCgcgucauGGACGGCggCAAggacgGCGGCCc -3'
miRNA:   3'- ugUUGCG-------UCUGUUGuaGUUa----CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 4384 0.67 0.941745
Target:  5'- cGCAGC-CAGGCGcCGUCGcgccgggccuugagcGUGCGGCa -3'
miRNA:   3'- -UGUUGcGUCUGUuGUAGU---------------UACGCUGg -5'
26454 3' -47.7 NC_005357.1 + 26732 0.67 0.939586
Target:  5'- cCAG-GCGGACGccuucuuCGUCGAUaGCGGCCu -3'
miRNA:   3'- uGUUgCGUCUGUu------GUAGUUA-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 5146 0.67 0.939586
Target:  5'- uGCcGCGCAGGCGGcCGUCGcUGCucacGCCc -3'
miRNA:   3'- -UGuUGCGUCUGUU-GUAGUuACGc---UGG- -5'
26454 3' -47.7 NC_005357.1 + 14617 0.67 0.933966
Target:  5'- gGCAGCGCGcgcGAgGACGUgc-UGCGGCUg -3'
miRNA:   3'- -UGUUGCGU---CUgUUGUAguuACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 40340 0.67 0.933387
Target:  5'- -gGGCGCgcuacauGGACGACAUCGuggugcuggGCGACg -3'
miRNA:   3'- ugUUGCG-------UCUGUUGUAGUua-------CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 19240 0.67 0.933387
Target:  5'- cGCGGCGuCAGGCccaugaacuucucGGCGUCGAUGCuggaaucGCCg -3'
miRNA:   3'- -UGUUGC-GUCUG-------------UUGUAGUUACGc------UGG- -5'
26454 3' -47.7 NC_005357.1 + 27446 0.68 0.928027
Target:  5'- nCAAUGCcGACGcCAUUcugGCGACCg -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGuuaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 14259 0.68 0.928027
Target:  5'- -gGGCGUGGGCAACggcgugGUCGAUcUGACCa -3'
miRNA:   3'- ugUUGCGUCUGUUG------UAGUUAcGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 5337 0.68 0.928027
Target:  5'- -uGGCGCAGcAUGGCAUCGcgcUGCGugGCCg -3'
miRNA:   3'- ugUUGCGUC-UGUUGUAGUu--ACGC--UGG- -5'
26454 3' -47.7 NC_005357.1 + 9336 0.68 0.92431
Target:  5'- cGCGGCGgGcGGCGGCAUCcuuuugcaguugcuuGAugaUGCGGCCg -3'
miRNA:   3'- -UGUUGCgU-CUGUUGUAG---------------UU---ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 14970 0.68 0.921767
Target:  5'- gGCGGCGCGcuGGCAuaccaGCGcCAGggccUGCGGCCg -3'
miRNA:   3'- -UGUUGCGU--CUGU-----UGUaGUU----ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 38232 0.68 0.921767
Target:  5'- gACGugcuCGCGGcCAACAugcccgccaUCGAgGCGGCCg -3'
miRNA:   3'- -UGUu---GCGUCuGUUGU---------AGUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 32884 0.68 0.921767
Target:  5'- --cGCGCccgacuggaaGGACAACAagAAcUGCGGCCa -3'
miRNA:   3'- uguUGCG----------UCUGUUGUagUU-ACGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.