miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26454 3' -47.7 NC_005357.1 + 32884 0.68 0.921767
Target:  5'- --cGCGCccgacuggaaGGACAACAagAAcUGCGGCCa -3'
miRNA:   3'- uguUGCG----------UCUGUUGUagUU-ACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 19609 0.68 0.917858
Target:  5'- gGCAGCGCGG-CGAaGUCGggccaguccggcaccAUGCuGACCg -3'
miRNA:   3'- -UGUUGCGUCuGUUgUAGU---------------UACG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 33759 0.68 0.915188
Target:  5'- gGCGGCGCAGcagccgcugcacACAGCGaguaCGGcGCGGCCu -3'
miRNA:   3'- -UGUUGCGUC------------UGUUGUa---GUUaCGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 25057 0.68 0.915188
Target:  5'- cGCGAUGCAGGCAuACcuGUCGcagGCGAUg -3'
miRNA:   3'- -UGUUGCGUCUGU-UG--UAGUua-CGCUGg -5'
26454 3' -47.7 NC_005357.1 + 5098 0.68 0.915188
Target:  5'- gGCGGC-CGGccCAGCGUcCGGUGCGGCUg -3'
miRNA:   3'- -UGUUGcGUCu-GUUGUA-GUUACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 4331 0.68 0.915188
Target:  5'- cACGAUGguGcCAGCcUUGAUGCuGGCCg -3'
miRNA:   3'- -UGUUGCguCuGUUGuAGUUACG-CUGG- -5'
26454 3' -47.7 NC_005357.1 + 621 0.68 0.915188
Target:  5'- aGCAGCGCcguGGACAcggcguccgGCGUCGAgucgGUGcCCa -3'
miRNA:   3'- -UGUUGCG---UCUGU---------UGUAGUUa---CGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 39696 0.68 0.915188
Target:  5'- aGCAGCGcCGGGCcGCGcUCAA-GCGuCCg -3'
miRNA:   3'- -UGUUGC-GUCUGuUGU-AGUUaCGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 12622 0.68 0.90829
Target:  5'- cCGACGCGcuCGGCAUCGcUGCuGCCg -3'
miRNA:   3'- uGUUGCGUcuGUUGUAGUuACGcUGG- -5'
26454 3' -47.7 NC_005357.1 + 17644 0.68 0.90829
Target:  5'- uCAACGCGGGCA---UCGAgGaCGACCc -3'
miRNA:   3'- uGUUGCGUCUGUuguAGUUaC-GCUGG- -5'
26454 3' -47.7 NC_005357.1 + 38879 0.68 0.90829
Target:  5'- uGCGGCGCGGuuGGCGggacugCGcgguGUGCGGCUg -3'
miRNA:   3'- -UGUUGCGUCugUUGUa-----GU----UACGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 36865 0.68 0.901076
Target:  5'- nCAGCGUuGGCGcCGUCGAUaccguggcggGCGACCu -3'
miRNA:   3'- uGUUGCGuCUGUuGUAGUUA----------CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 26400 0.68 0.901076
Target:  5'- uACAACugGCAGGCcaacgguuuCGUCAccgGCGACCu -3'
miRNA:   3'- -UGUUG--CGUCUGuu-------GUAGUua-CGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 37669 0.69 0.893551
Target:  5'- gGCgAACGCcGAgAACAUCGcgGCcguGGCCg -3'
miRNA:   3'- -UG-UUGCGuCUgUUGUAGUuaCG---CUGG- -5'
26454 3' -47.7 NC_005357.1 + 30467 0.69 0.893551
Target:  5'- gACAACGUGGACAACA------UGACCg -3'
miRNA:   3'- -UGUUGCGUCUGUUGUaguuacGCUGG- -5'
26454 3' -47.7 NC_005357.1 + 29791 0.69 0.893551
Target:  5'- cCGACGCcaaaGGACGGCAgcagCGAUGcCGAgCg -3'
miRNA:   3'- uGUUGCG----UCUGUUGUa---GUUAC-GCUgG- -5'
26454 3' -47.7 NC_005357.1 + 13720 0.69 0.893551
Target:  5'- cGCGuGCGCcGACAGCAUCGAccuUGUGAa- -3'
miRNA:   3'- -UGU-UGCGuCUGUUGUAGUU---ACGCUgg -5'
26454 3' -47.7 NC_005357.1 + 37074 0.69 0.893551
Target:  5'- cGCggUGCAGGCGGCcacgCAGcGCGAUg -3'
miRNA:   3'- -UGuuGCGUCUGUUGua--GUUaCGCUGg -5'
26454 3' -47.7 NC_005357.1 + 5749 0.69 0.88572
Target:  5'- cCAGCGCgccGGGCAGCG--AGUGCG-CCa -3'
miRNA:   3'- uGUUGCG---UCUGUUGUagUUACGCuGG- -5'
26454 3' -47.7 NC_005357.1 + 19046 0.69 0.88572
Target:  5'- aGCGGcCGCcGGCGGCGUCGAUcaGCGugUc -3'
miRNA:   3'- -UGUU-GCGuCUGUUGUAGUUA--CGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.