Results 21 - 40 of 137 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 18148 | 0.66 | 0.966786 |
Target: 5'- gGCucGCGCAGcuugccgaaAUAGCccuguuUCAGUGCGAUCa -3' miRNA: 3'- -UGu-UGCGUC---------UGUUGu-----AGUUACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 14745 | 0.66 | 0.966786 |
Target: 5'- gGCAguacGCGCAGcauuggcgcGCAGCGugUCGGUGuCGAUCu -3' miRNA: 3'- -UGU----UGCGUC---------UGUUGU--AGUUAC-GCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 33238 | 0.66 | 0.963001 |
Target: 5'- cGCcgaGCAGGcCAACGUCGAcgGCG-CCa -3' miRNA: 3'- -UGuugCGUCU-GUUGUAGUUa-CGCuGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 8118 | 0.66 | 0.963001 |
Target: 5'- uGCAccGCGCGGcCGGCGUUggUuguggGCGugCg -3' miRNA: 3'- -UGU--UGCGUCuGUUGUAGuuA-----CGCugG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 27596 | 0.66 | 0.960592 |
Target: 5'- gGCGGCGcCAGAUGGCGUggucgucgcccuugaCGAUG-GGCCg -3' miRNA: 3'- -UGUUGC-GUCUGUUGUA---------------GUUACgCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 23193 | 0.66 | 0.958926 |
Target: 5'- gACAGCaGCAGGuCGGCcucGUCGGUGaauuCGGCCu -3' miRNA: 3'- -UGUUG-CGUCU-GUUG---UAGUUAC----GCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 23251 | 0.66 | 0.958926 |
Target: 5'- uCGACGCcGGCGGCA-CGGgcaGCGACa -3' miRNA: 3'- uGUUGCGuCUGUUGUaGUUa--CGCUGg -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 30577 | 0.66 | 0.958926 |
Target: 5'- -uGGCGCGGGguucgcccaggcCAACcgCGGcGCGGCCg -3' miRNA: 3'- ugUUGCGUCU------------GUUGuaGUUaCGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 7380 | 0.66 | 0.958926 |
Target: 5'- cCAGCgGCGGGCAc---CGcgGCGACCu -3' miRNA: 3'- uGUUG-CGUCUGUuguaGUuaCGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 9766 | 0.66 | 0.958926 |
Target: 5'- gGCuucACGuCGGGCAGCuUCGcgGCG-CCg -3' miRNA: 3'- -UGu--UGC-GUCUGUUGuAGUuaCGCuGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 20607 | 0.66 | 0.958503 |
Target: 5'- cCuuCGcCAGGCGGCGUCGcaggucgGUGuCGGCCu -3' miRNA: 3'- uGuuGC-GUCUGUUGUAGU-------UAC-GCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 38980 | 0.67 | 0.954553 |
Target: 5'- -gGGCGC--GCGGCGUC--UGUGACCa -3' miRNA: 3'- ugUUGCGucUGUUGUAGuuACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 28815 | 0.67 | 0.954553 |
Target: 5'- aGCAGC-CAGcGCGcCGUCGucggguUGCGGCCg -3' miRNA: 3'- -UGUUGcGUC-UGUuGUAGUu-----ACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 37474 | 0.67 | 0.954553 |
Target: 5'- aGCAGCGCGauacgcGGCuGCAUCGugGCGcCCg -3' miRNA: 3'- -UGUUGCGU------CUGuUGUAGUuaCGCuGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 9563 | 0.67 | 0.954553 |
Target: 5'- -gGGCGC-GACAAUcUCGGcgccgaccgucUGCGGCCa -3' miRNA: 3'- ugUUGCGuCUGUUGuAGUU-----------ACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 38322 | 0.67 | 0.954099 |
Target: 5'- uGCAGCGCAGGCuggcggaAACAcCAcgGCgcaGAUCa -3' miRNA: 3'- -UGUUGCGUCUG-------UUGUaGUuaCG---CUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 35918 | 0.67 | 0.953182 |
Target: 5'- -gGGCGCAgGACAcaacuacggcaagcGCGUgAAUGCgGGCCu -3' miRNA: 3'- ugUUGCGU-CUGU--------------UGUAgUUACG-CUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 34663 | 0.67 | 0.949876 |
Target: 5'- cCGGCGCAGAUcGCGcCGGUGCuGCa -3' miRNA: 3'- uGUUGCGUCUGuUGUaGUUACGcUGg -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 8576 | 0.67 | 0.949876 |
Target: 5'- gGCGuCGUAGGCcGCGc--GUGCGGCCu -3' miRNA: 3'- -UGUuGCGUCUGuUGUaguUACGCUGG- -5' |
|||||||
26454 | 3' | -47.7 | NC_005357.1 | + | 23536 | 0.67 | 0.949876 |
Target: 5'- gGCGGCGCAcGCG--GUCGAUGgccuCGGCCg -3' miRNA: 3'- -UGUUGCGUcUGUugUAGUUAC----GCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home