Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26455 | 3' | -50.7 | NC_005357.1 | + | 14032 | 0.71 | 0.681355 |
Target: 5'- uGGCGccGCGCCGCcGGCGUCgAACugGa -3' miRNA: 3'- gCUGU--UGCGGCGcUUGUAG-UUGugCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 14238 | 0.7 | 0.713801 |
Target: 5'- gGACAagGCGCCGCaccugcuGGGCGUgGGCAaCGGc -3' miRNA: 3'- gCUGU--UGCGGCG-------CUUGUAgUUGU-GCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 14379 | 0.69 | 0.7466 |
Target: 5'- gGGCAuccGCGCCGCGGaacguagGCGUagcgaAGCugGGc -3' miRNA: 3'- gCUGU---UGCGGCGCU-------UGUAg----UUGugCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 14564 | 0.67 | 0.860791 |
Target: 5'- aGAUGGCGagCGCGGACAcguucuugagcagCGGCGCGGc -3' miRNA: 3'- gCUGUUGCg-GCGCUUGUa------------GUUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 14616 | 0.72 | 0.590513 |
Target: 5'- gGGCAGCGCgCGCGAggacgugcuGCGgcuGCGCGGc -3' miRNA: 3'- gCUGUUGCG-GCGCU---------UGUaguUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 15074 | 0.67 | 0.855648 |
Target: 5'- gGACGAgUGCUGCGAG-GUCGGCcCGGc -3' miRNA: 3'- gCUGUU-GCGGCGCUUgUAGUUGuGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 15209 | 0.75 | 0.449597 |
Target: 5'- cCGAUGGCGauuuCCGCcGACAUCGACACGa -3' miRNA: 3'- -GCUGUUGC----GGCGcUUGUAGUUGUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 15584 | 0.67 | 0.864168 |
Target: 5'- aCGAC-GCGCUGCGGAugcaccgcgcCAUCGGCcaggaugcugACGGu -3' miRNA: 3'- -GCUGuUGCGGCGCUU----------GUAGUUG----------UGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 16419 | 0.68 | 0.806543 |
Target: 5'- gGACAcgGCCGCGGgguaaucgccggcgGCGUUgAACACGGc -3' miRNA: 3'- gCUGUugCGGCGCU--------------UGUAG-UUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 16635 | 0.7 | 0.736862 |
Target: 5'- aCGAUAccgagcGCGCCGCGcGCAUC---GCGGc -3' miRNA: 3'- -GCUGU------UGCGGCGCuUGUAGuugUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 16874 | 0.67 | 0.855648 |
Target: 5'- --cCGACGCCGacauCAUCGGCuACGGg -3' miRNA: 3'- gcuGUUGCGGCgcuuGUAGUUG-UGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 17197 | 0.7 | 0.725935 |
Target: 5'- uGAUuuCGCCGCcgccgaagGAGCGUUgcagGACGCGGa -3' miRNA: 3'- gCUGuuGCGGCG--------CUUGUAG----UUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 17288 | 0.69 | 0.768915 |
Target: 5'- aCGAagcCGGCGCCGCGGGCGcgCAuccauuccggcAUAUGGg -3' miRNA: 3'- -GCU---GUUGCGGCGCUUGUa-GU-----------UGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 17635 | 0.66 | 0.902747 |
Target: 5'- aCGGCGACuucaaCGCGGGCAUCGAgGaCGa -3' miRNA: 3'- -GCUGUUGcg---GCGCUUGUAGUUgU-GCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 17759 | 0.66 | 0.909616 |
Target: 5'- gGACGugGCCcgcgGCGGGCGcgaCAACACc- -3' miRNA: 3'- gCUGUugCGG----CGCUUGUa--GUUGUGcc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 18183 | 0.66 | 0.909616 |
Target: 5'- uGGCAA-GCCGCGAggACAUCAu--CGa -3' miRNA: 3'- gCUGUUgCGGCGCU--UGUAGUuguGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 18232 | 0.69 | 0.768915 |
Target: 5'- uGGCAGCGCCuacgugcucGCGcuCAUgGACACGc -3' miRNA: 3'- gCUGUUGCGG---------CGCuuGUAgUUGUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 18391 | 0.66 | 0.888146 |
Target: 5'- cCGAUGGCGCCggugGCGGccACGUCGGCgaaGGu -3' miRNA: 3'- -GCUGUUGCGG----CGCU--UGUAGUUGug-CC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 18465 | 0.66 | 0.888146 |
Target: 5'- -cGCGGCGCCgGCGG-CGUCGGC-CGa -3' miRNA: 3'- gcUGUUGCGG-CGCUuGUAGUUGuGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 18523 | 0.69 | 0.779314 |
Target: 5'- cCGGCAuggaaGCCGCGGGCGU-GGCGCa- -3' miRNA: 3'- -GCUGUug---CGGCGCUUGUAgUUGUGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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