miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 38494 0.67 0.846878
Target:  5'- -uACAACGUgaccauCGCGGACggCAGCGCGu -3'
miRNA:   3'- gcUGUUGCG------GCGCUUGuaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 13616 0.67 0.855648
Target:  5'- cCGACGACGgCGCGcuggcugcucAAgAUCGGCAaccaGGg -3'
miRNA:   3'- -GCUGUUGCgGCGC----------UUgUAGUUGUg---CC- -5'
26455 3' -50.7 NC_005357.1 + 1373 0.67 0.87243
Target:  5'- uGACAuaggGCGCCGCGGccACGcgCAcaACGGu -3'
miRNA:   3'- gCUGU----UGCGGCGCU--UGUa-GUugUGCC- -5'
26455 3' -50.7 NC_005357.1 + 15584 0.67 0.864168
Target:  5'- aCGAC-GCGCUGCGGAugcaccgcgcCAUCGGCcaggaugcugACGGu -3'
miRNA:   3'- -GCUGuUGCGGCGCUU----------GUAGUUG----------UGCC- -5'
26455 3' -50.7 NC_005357.1 + 13938 0.67 0.864168
Target:  5'- -cGCAGCGCCGUGGACuggauGCccuCGGa -3'
miRNA:   3'- gcUGUUGCGGCGCUUGuagu-UGu--GCC- -5'
26455 3' -50.7 NC_005357.1 + 26053 0.67 0.855648
Target:  5'- gCGGCGggcgcgcuccauGCGCUcgGCGAAC-UCGGgGCGGg -3'
miRNA:   3'- -GCUGU------------UGCGG--CGCUUGuAGUUgUGCC- -5'
26455 3' -50.7 NC_005357.1 + 40148 0.67 0.859087
Target:  5'- uCGACcGCGCggcacuguaCGCGAugAUCGacaagaagauucauuGCGCGGc -3'
miRNA:   3'- -GCUGuUGCG---------GCGCUugUAGU---------------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 7068 0.67 0.87243
Target:  5'- gCGGCAGCGUCGUuuGAACA--GGCugGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCG--CUUGUagUUG--UGCC- -5'
26455 3' -50.7 NC_005357.1 + 35767 0.67 0.87243
Target:  5'- uCGGCGugG-CGCaGAcCAUgAGCGCGGa -3'
miRNA:   3'- -GCUGUugCgGCG-CUuGUAgUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 31548 0.67 0.878055
Target:  5'- gGAauACGCCGCGcGCAUCGcgccgaccgaagccACGCaGGg -3'
miRNA:   3'- gCUguUGCGGCGCuUGUAGU--------------UGUG-CC- -5'
26455 3' -50.7 NC_005357.1 + 16874 0.67 0.855648
Target:  5'- --cCGACGCCGacauCAUCGGCuACGGg -3'
miRNA:   3'- gcuGUUGCGGCgcuuGUAGUUG-UGCC- -5'
26455 3' -50.7 NC_005357.1 + 10322 0.67 0.855648
Target:  5'- uCGGCAGCgGCCa-GGGCGUugagCAACGCGGc -3'
miRNA:   3'- -GCUGUUG-CGGcgCUUGUA----GUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 15074 0.67 0.855648
Target:  5'- gGACGAgUGCUGCGAG-GUCGGCcCGGc -3'
miRNA:   3'- gCUGUU-GCGGCGCUUgUAGUUGuGCC- -5'
26455 3' -50.7 NC_005357.1 + 4106 0.67 0.846878
Target:  5'- gGGCGGCGCugaauucguCGCGGuCGUCGGCuuCGGu -3'
miRNA:   3'- gCUGUUGCG---------GCGCUuGUAGUUGu-GCC- -5'
26455 3' -50.7 NC_005357.1 + 14564 0.67 0.860791
Target:  5'- aGAUGGCGagCGCGGACAcguucuugagcagCGGCGCGGc -3'
miRNA:   3'- gCUGUUGCg-GCGCUUGUa------------GUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 996 0.67 0.845987
Target:  5'- uGGCggUGCCGUGGuucaccgcaGCGUCGAacaccuggaaggcCACGGc -3'
miRNA:   3'- gCUGuuGCGGCGCU---------UGUAGUU-------------GUGCC- -5'
26455 3' -50.7 NC_005357.1 + 3491 0.67 0.845987
Target:  5'- aCGACGGC-CCGCuguaccaGAGCG-CAGCGCGa -3'
miRNA:   3'- -GCUGUUGcGGCG-------CUUGUaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 23377 0.67 0.846878
Target:  5'- uGGCGuGC-CCGCuGAAaAUCAGCACGGu -3'
miRNA:   3'- gCUGU-UGcGGCG-CUUgUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 37474 0.67 0.846878
Target:  5'- -aGCAGCGCgauaCGCGGcuGCAUCGugGCGc -3'
miRNA:   3'- gcUGUUGCG----GCGCU--UGUAGUugUGCc -5'
26455 3' -50.7 NC_005357.1 + 37916 0.67 0.850416
Target:  5'- gCGAUgcgccaagcgccuguGGCGCCGCGcGCAUCcg-GCGGu -3'
miRNA:   3'- -GCUG---------------UUGCGGCGCuUGUAGuugUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.