miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 19088 0.7 0.692606
Target:  5'- gCGGCGAgGCCGuCGAAUu---GCGCGGc -3'
miRNA:   3'- -GCUGUUgCGGC-GCUUGuaguUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 9209 0.7 0.692606
Target:  5'- uCGGCGGCGCgGCGcACGUucugCGGCGCGc -3'
miRNA:   3'- -GCUGUUGCGgCGCuUGUA----GUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 28720 0.7 0.722637
Target:  5'- uGuCGGCGCaCGCGAggaugagcgccuugGCAUCGuccaGCGCGGu -3'
miRNA:   3'- gCuGUUGCG-GCGCU--------------UGUAGU----UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 17197 0.7 0.725935
Target:  5'- uGAUuuCGCCGCcgccgaagGAGCGUUgcagGACGCGGa -3'
miRNA:   3'- gCUGuuGCGGCG--------CUUGUAG----UUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 35131 0.7 0.725935
Target:  5'- uCGACGGCGCCauccGCGAGCAc---UACGGc -3'
miRNA:   3'- -GCUGUUGCGG----CGCUUGUaguuGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 8549 0.7 0.725935
Target:  5'- uCGACAgccGCGCCgaugGCGGGCAgcgacaggcgCGACACGa -3'
miRNA:   3'- -GCUGU---UGCGG----CGCUUGUa---------GUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 14238 0.7 0.713801
Target:  5'- gGACAagGCGCCGCaccugcuGGGCGUgGGCAaCGGc -3'
miRNA:   3'- gCUGU--UGCGGCG-------CUUGUAgUUGU-GCC- -5'
26455 3' -50.7 NC_005357.1 + 41546 0.7 0.725935
Target:  5'- -aACAACGCgGCGGcccuCGUCGAUAgGGa -3'
miRNA:   3'- gcUGUUGCGgCGCUu---GUAGUUGUgCC- -5'
26455 3' -50.7 NC_005357.1 + 33910 0.7 0.713801
Target:  5'- gGGCAAguuCGCCgGCGAcaucaggGCAUCGACGUGGa -3'
miRNA:   3'- gCUGUU---GCGG-CGCU-------UGUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 13866 0.7 0.692606
Target:  5'- cCGACGugcGCGCCGCGAugGcCG--GCGGc -3'
miRNA:   3'- -GCUGU---UGCGGCGCUugUaGUugUGCC- -5'
26455 3' -50.7 NC_005357.1 + 4197 0.7 0.692606
Target:  5'- gGGCAuguugGCCGCGAGCA-CGuCGCGGc -3'
miRNA:   3'- gCUGUug---CGGCGCUUGUaGUuGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 16635 0.7 0.736862
Target:  5'- aCGAUAccgagcGCGCCGCGcGCAUC---GCGGc -3'
miRNA:   3'- -GCUGU------UGCGGCGCuUGUAGuugUGCC- -5'
26455 3' -50.7 NC_005357.1 + 25696 0.69 0.747676
Target:  5'- uCGGCAACGCUGCucAUAcCAGCcccGCGGc -3'
miRNA:   3'- -GCUGUUGCGGCGcuUGUaGUUG---UGCC- -5'
26455 3' -50.7 NC_005357.1 + 26984 0.69 0.766816
Target:  5'- cCGAcCGACGCUGCaaGAACuggggcuacagCGGCGCGGa -3'
miRNA:   3'- -GCU-GUUGCGGCG--CUUGua---------GUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 4926 0.69 0.768915
Target:  5'- uCGGCAGCGaugcCCGCGAcgGUCuGCACGu -3'
miRNA:   3'- -GCUGUUGC----GGCGCUugUAGuUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 17288 0.69 0.768915
Target:  5'- aCGAagcCGGCGCCGCGGGCGcgCAuccauuccggcAUAUGGg -3'
miRNA:   3'- -GCU---GUUGCGGCGCUUGUa-GU-----------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 804 0.69 0.776211
Target:  5'- cCGGCGacGCGCCGCgcccagcccuugccGAACGUCGGCcaggUGGg -3'
miRNA:   3'- -GCUGU--UGCGGCG--------------CUUGUAGUUGu---GCC- -5'
26455 3' -50.7 NC_005357.1 + 34879 0.69 0.779314
Target:  5'- cCGGUGGCGCCGCGGAUcgagCAcgccgccgagcGCACGGu -3'
miRNA:   3'- -GCUGUUGCGGCGCUUGua--GU-----------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 388 0.69 0.779314
Target:  5'- aGACGAUGCCcaggGCGccCAccagCAGCACGGc -3'
miRNA:   3'- gCUGUUGCGG----CGCuuGUa---GUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 24537 0.69 0.78955
Target:  5'- gGugGAUGaCCGCGuggucGCG-CAGCGCGGc -3'
miRNA:   3'- gCugUUGC-GGCGCu----UGUaGUUGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.