miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 27621 0.66 0.895589
Target:  5'- aGGCAGCGCCGcCGAgguGCAgguuuccagCGACAUc- -3'
miRNA:   3'- gCUGUUGCGGC-GCU---UGUa--------GUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 12306 0.66 0.915549
Target:  5'- cCGGCGGCGUguucuggCGCGGccuCAUCGcCugGGa -3'
miRNA:   3'- -GCUGUUGCG-------GCGCUu--GUAGUuGugCC- -5'
26455 3' -50.7 NC_005357.1 + 6439 0.66 0.916193
Target:  5'- gCGACAccacCGcCCGCGAagGCGUCGccgucGCGCaGGa -3'
miRNA:   3'- -GCUGUu---GC-GGCGCU--UGUAGU-----UGUG-CC- -5'
26455 3' -50.7 NC_005357.1 + 19607 0.66 0.902044
Target:  5'- uCGGCAGCGCgGCGAAgucgggcCAgucCGGCACc- -3'
miRNA:   3'- -GCUGUUGCGgCGCUU-------GUa--GUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 33211 0.66 0.916193
Target:  5'- gGGC-GCGCCGCaGAACGUgCGcCGCGc -3'
miRNA:   3'- gCUGuUGCGGCG-CUUGUA-GUuGUGCc -5'
26455 3' -50.7 NC_005357.1 + 8465 0.66 0.916193
Target:  5'- uCGAgGugGCCuGCGAugccGCAgcCGACGCGa -3'
miRNA:   3'- -GCUgUugCGG-CGCU----UGUa-GUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 17635 0.66 0.902747
Target:  5'- aCGGCGACuucaaCGCGGGCAUCGAgGaCGa -3'
miRNA:   3'- -GCUGUUGcg---GCGCUUGUAGUUgU-GCc -5'
26455 3' -50.7 NC_005357.1 + 18183 0.66 0.909616
Target:  5'- uGGCAA-GCCGCGAggACAUCAu--CGa -3'
miRNA:   3'- gCUGUUgCGGCGCU--UGUAGUuguGCc -5'
26455 3' -50.7 NC_005357.1 + 28504 0.66 0.888146
Target:  5'- -cACGGCGCUGCGcGACAUCGcccugaACugGa -3'
miRNA:   3'- gcUGUUGCGGCGC-UUGUAGU------UGugCc -5'
26455 3' -50.7 NC_005357.1 + 18391 0.66 0.888146
Target:  5'- cCGAUGGCGCCggugGCGGccACGUCGGCgaaGGu -3'
miRNA:   3'- -GCUGUUGCGG----CGCU--UGUAGUUGug-CC- -5'
26455 3' -50.7 NC_005357.1 + 7219 0.66 0.902747
Target:  5'- aCGGCAgcaucuGCGCCGCGcuCAcccUCGGCGauguCGGc -3'
miRNA:   3'- -GCUGU------UGCGGCGCuuGU---AGUUGU----GCC- -5'
26455 3' -50.7 NC_005357.1 + 31431 0.66 0.888146
Target:  5'- aCGGCGACGCCaCGAucugCGGCGUGGu -3'
miRNA:   3'- -GCUGUUGCGGcGCUuguaGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 34193 0.66 0.888146
Target:  5'- gCGACuuCGCCGaCGAG----GGCACGGc -3'
miRNA:   3'- -GCUGuuGCGGC-GCUUguagUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 32588 0.66 0.888146
Target:  5'- cCGcCGACGCUGUGAccaagcuggcccGCGUCAAgggccgcgacgcCGCGGu -3'
miRNA:   3'- -GCuGUUGCGGCGCU------------UGUAGUU------------GUGCC- -5'
26455 3' -50.7 NC_005357.1 + 2428 0.66 0.895589
Target:  5'- aCGGCAGCagGCCGgccuCGAAgAUCGGCGCc- -3'
miRNA:   3'- -GCUGUUG--CGGC----GCUUgUAGUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 15584 0.67 0.864168
Target:  5'- aCGAC-GCGCUGCGGAugcaccgcgcCAUCGGCcaggaugcugACGGu -3'
miRNA:   3'- -GCUGuUGCGGCGCUU----------GUAGUUG----------UGCC- -5'
26455 3' -50.7 NC_005357.1 + 38494 0.67 0.846878
Target:  5'- -uACAACGUgaccauCGCGGACggCAGCGCGu -3'
miRNA:   3'- gcUGUUGCG------GCGCUUGuaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 7068 0.67 0.87243
Target:  5'- gCGGCAGCGUCGUuuGAACA--GGCugGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCG--CUUGUagUUG--UGCC- -5'
26455 3' -50.7 NC_005357.1 + 35767 0.67 0.87243
Target:  5'- uCGGCGugG-CGCaGAcCAUgAGCGCGGa -3'
miRNA:   3'- -GCUGUugCgGCG-CUuGUAgUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 26361 0.67 0.846878
Target:  5'- -uACGGCGCCGCGcGCggCGGcCACGu -3'
miRNA:   3'- gcUGUUGCGGCGCuUGuaGUU-GUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.