miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 3533 0.73 0.545651
Target:  5'- gCGACGugccguuccagGCGCCGcCGAAUAgcgCAGCAgCGGg -3'
miRNA:   3'- -GCUGU-----------UGCGGC-GCUUGUa--GUUGU-GCC- -5'
26455 3' -50.7 NC_005357.1 + 20759 0.73 0.556779
Target:  5'- aGGCGcuGCGCCGCGcucGAC-UCAucGCGCGGc -3'
miRNA:   3'- gCUGU--UGCGGCGC---UUGuAGU--UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 24583 0.72 0.567971
Target:  5'- gCGACGAgGCCacggugGCGGGCAUCAACcCGc -3'
miRNA:   3'- -GCUGUUgCGG------CGCUUGUAGUUGuGCc -5'
26455 3' -50.7 NC_005357.1 + 35234 0.72 0.589381
Target:  5'- gGACAucGCGCUGUcccggcugcgucaGGGCGUCAGCGCGu -3'
miRNA:   3'- gCUGU--UGCGGCG-------------CUUGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 14616 0.72 0.590513
Target:  5'- gGGCAGCGCgCGCGAggacgugcuGCGgcuGCGCGGc -3'
miRNA:   3'- gCUGUUGCG-GCGCU---------UGUaguUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 9883 0.72 0.597308
Target:  5'- gCGGCAuCGCCgGCGGcagcauccuggccgGCAUCAccagccuGCACGGg -3'
miRNA:   3'- -GCUGUuGCGG-CGCU--------------UGUAGU-------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 27502 0.72 0.601845
Target:  5'- cCGGCGGCcucgGCCGCcAGCuucUCGGCGCGGu -3'
miRNA:   3'- -GCUGUUG----CGGCGcUUGu--AGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 22850 0.72 0.612068
Target:  5'- cCGACAgcgcGCGCUGCGAAUugggcugcuucugGUUcGCGCGGu -3'
miRNA:   3'- -GCUGU----UGCGGCGCUUG-------------UAGuUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 29239 0.72 0.613205
Target:  5'- gCGuACAACGCCGgccaaGGGCGccCAGCGCGGc -3'
miRNA:   3'- -GC-UGUUGCGGCg----CUUGUa-GUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 39608 0.71 0.621168
Target:  5'- -cGCGugGCCGCGAGCAccuggcccgacgaaUCGACGaagUGGg -3'
miRNA:   3'- gcUGUugCGGCGCUUGU--------------AGUUGU---GCC- -5'
26455 3' -50.7 NC_005357.1 + 37273 0.71 0.635967
Target:  5'- aGGCAAUGCgGCaAACAUCAACGuCGu -3'
miRNA:   3'- gCUGUUGCGgCGcUUGUAGUUGU-GCc -5'
26455 3' -50.7 NC_005357.1 + 1047 0.71 0.647348
Target:  5'- gCGGCAGCaugucGCCGCGAaccgGCGUCcaguaacgcGCGCGGu -3'
miRNA:   3'- -GCUGUUG-----CGGCGCU----UGUAGu--------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 25776 0.71 0.647348
Target:  5'- gCGGCAACgaugGCCGCGAugcGCG-CGGCGCGc -3'
miRNA:   3'- -GCUGUUG----CGGCGCU---UGUaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 3193 0.71 0.670053
Target:  5'- -uGCAcACGCaCGCGGGCAuuuUCAACACGc -3'
miRNA:   3'- gcUGU-UGCG-GCGCUUGU---AGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 40044 0.71 0.681355
Target:  5'- uGACAaggguACGCaCGCGGGCGUCugcCACGu -3'
miRNA:   3'- gCUGU-----UGCG-GCGCUUGUAGuu-GUGCc -5'
26455 3' -50.7 NC_005357.1 + 37302 0.71 0.681355
Target:  5'- cCGACAACGCa--GAcaACAUCAAUGCGa -3'
miRNA:   3'- -GCUGUUGCGgcgCU--UGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 23974 0.71 0.681355
Target:  5'- cCGcCGGCGCCGCGAcCGUCAcguuuuCGGu -3'
miRNA:   3'- -GCuGUUGCGGCGCUuGUAGUugu---GCC- -5'
26455 3' -50.7 NC_005357.1 + 28736 0.71 0.681355
Target:  5'- gGGCAgauggACGCCGaCG-ACAUCcuCACGGu -3'
miRNA:   3'- gCUGU-----UGCGGC-GCuUGUAGuuGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 14032 0.71 0.681355
Target:  5'- uGGCGccGCGCCGCcGGCGUCgAACugGa -3'
miRNA:   3'- gCUGU--UGCGGCGcUUGUAG-UUGugCc -5'
26455 3' -50.7 NC_005357.1 + 36968 0.71 0.681355
Target:  5'- aCGACcGCGgCGUGAugGUCGAUACc- -3'
miRNA:   3'- -GCUGuUGCgGCGCUugUAGUUGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.