miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 37152 1.11 0.001887
Target:  5'- cCGACAACGCCGCGAACAUCAACACGGu -3'
miRNA:   3'- -GCUGUUGCGGCGCUUGUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 8429 0.81 0.188185
Target:  5'- gCGGgGGCGUCGCgGAACAUCGGCGCGa -3'
miRNA:   3'- -GCUgUUGCGGCG-CUUGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 36820 0.81 0.20113
Target:  5'- --uCGACGCCguggcuaccaacgagGCGGACAUCGACACGGu -3'
miRNA:   3'- gcuGUUGCGG---------------CGCUUGUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 9806 0.79 0.27497
Target:  5'- gGACAGCGaCCGCG-GCGUCGcggcccuugACGCGGg -3'
miRNA:   3'- gCUGUUGC-GGCGCuUGUAGU---------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 25023 0.79 0.27497
Target:  5'- aCGugGGCGCCGCuGAaucgaagcgguGCGUCGGCGCGa -3'
miRNA:   3'- -GCugUUGCGGCG-CU-----------UGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 9311 0.78 0.2973
Target:  5'- uCGGCGACcugGCgGCGcACGUCGGCGCGGc -3'
miRNA:   3'- -GCUGUUG---CGgCGCuUGUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 5803 0.77 0.329225
Target:  5'- gCGGCAGCGCCaGCGGAUAgUCgGGCAUGGc -3'
miRNA:   3'- -GCUGUUGCGG-CGCUUGU-AG-UUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 27780 0.76 0.369878
Target:  5'- gGACAcguacacgaagcgcGCGCCGCGcAGCcgCAGCACGu -3'
miRNA:   3'- gCUGU--------------UGCGGCGC-UUGuaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 35302 0.76 0.372587
Target:  5'- cCGACGACuUCGCGGACGUgAGCGgGGa -3'
miRNA:   3'- -GCUGUUGcGGCGCUUGUAgUUGUgCC- -5'
26455 3' -50.7 NC_005357.1 + 22784 0.76 0.381713
Target:  5'- gGuCAACGCCcuGCGGGCcgGUCAGCAUGGu -3'
miRNA:   3'- gCuGUUGCGG--CGCUUG--UAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 20867 0.75 0.449597
Target:  5'- aCGACGgcgcGCGCCGUGAuu-UCGAcCACGGa -3'
miRNA:   3'- -GCUGU----UGCGGCGCUuguAGUU-GUGCC- -5'
26455 3' -50.7 NC_005357.1 + 621 0.75 0.449597
Target:  5'- -aGCAGCGCCGUGGACA-CGGCGucCGGc -3'
miRNA:   3'- gcUGUUGCGGCGCUUGUaGUUGU--GCC- -5'
26455 3' -50.7 NC_005357.1 + 37362 0.75 0.449597
Target:  5'- uCGGCAAUGCCGacAACAUCAAUgcaGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCgcUUGUAGUUG---UGCC- -5'
26455 3' -50.7 NC_005357.1 + 15209 0.75 0.449597
Target:  5'- cCGAUGGCGauuuCCGCcGACAUCGACACGa -3'
miRNA:   3'- -GCUGUUGC----GGCGcUUGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 20015 0.74 0.470187
Target:  5'- aGGCGugGCUgGCGAACGUCA-CGCGc -3'
miRNA:   3'- gCUGUugCGG-CGCUUGUAGUuGUGCc -5'
26455 3' -50.7 NC_005357.1 + 4513 0.74 0.48066
Target:  5'- gGGCGGCGcCCGUGAACGUgGcguGCugGGc -3'
miRNA:   3'- gCUGUUGC-GGCGCUUGUAgU---UGugCC- -5'
26455 3' -50.7 NC_005357.1 + 20768 0.74 0.491246
Target:  5'- uCGugGACGUgCGCGAgcGCAUCAAgGCGa -3'
miRNA:   3'- -GCugUUGCG-GCGCU--UGUAGUUgUGCc -5'
26455 3' -50.7 NC_005357.1 + 8738 0.74 0.491246
Target:  5'- cCGGCgGGCGCgGCGcuacCGUCAACAUGGa -3'
miRNA:   3'- -GCUG-UUGCGgCGCuu--GUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 19331 0.73 0.512733
Target:  5'- cCGugGGCGCCGCcguuGGCGUCGGgGCGa -3'
miRNA:   3'- -GCugUUGCGGCGc---UUGUAGUUgUGCc -5'
26455 3' -50.7 NC_005357.1 + 3533 0.73 0.545651
Target:  5'- gCGACGugccguuccagGCGCCGcCGAAUAgcgCAGCAgCGGg -3'
miRNA:   3'- -GCUGU-----------UGCGGC-GCUUGUa--GUUGU-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.