miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 388 0.69 0.779314
Target:  5'- aGACGAUGCCcaggGCGccCAccagCAGCACGGc -3'
miRNA:   3'- gCUGUUGCGG----CGCuuGUa---GUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 621 0.75 0.449597
Target:  5'- -aGCAGCGCCGUGGACA-CGGCGucCGGc -3'
miRNA:   3'- gcUGUUGCGGCGCUUGUaGUUGU--GCC- -5'
26455 3' -50.7 NC_005357.1 + 804 0.69 0.776211
Target:  5'- cCGGCGacGCGCCGCgcccagcccuugccGAACGUCGGCcaggUGGg -3'
miRNA:   3'- -GCUGU--UGCGGCG--------------CUUGUAGUUGu---GCC- -5'
26455 3' -50.7 NC_005357.1 + 996 0.67 0.845987
Target:  5'- uGGCggUGCCGUGGuucaccgcaGCGUCGAacaccuggaaggcCACGGc -3'
miRNA:   3'- gCUGuuGCGGCGCU---------UGUAGUU-------------GUGCC- -5'
26455 3' -50.7 NC_005357.1 + 1047 0.71 0.647348
Target:  5'- gCGGCAGCaugucGCCGCGAaccgGCGUCcaguaacgcGCGCGGu -3'
miRNA:   3'- -GCUGUUG-----CGGCGCU----UGUAGu--------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 1373 0.67 0.87243
Target:  5'- uGACAuaggGCGCCGCGGccACGcgCAcaACGGu -3'
miRNA:   3'- gCUGU----UGCGGCGCU--UGUa-GUugUGCC- -5'
26455 3' -50.7 NC_005357.1 + 2428 0.66 0.895589
Target:  5'- aCGGCAGCagGCCGgccuCGAAgAUCGGCGCc- -3'
miRNA:   3'- -GCUGUUG--CGGC----GCUUgUAGUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 3193 0.71 0.670053
Target:  5'- -uGCAcACGCaCGCGGGCAuuuUCAACACGc -3'
miRNA:   3'- gcUGU-UGCG-GCGCUUGU---AGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 3491 0.67 0.845987
Target:  5'- aCGACGGC-CCGCuguaccaGAGCG-CAGCGCGa -3'
miRNA:   3'- -GCUGUUGcGGCG-------CUUGUaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 3533 0.73 0.545651
Target:  5'- gCGACGugccguuccagGCGCCGcCGAAUAgcgCAGCAgCGGg -3'
miRNA:   3'- -GCUGU-----------UGCGGC-GCUUGUa--GUUGU-GCC- -5'
26455 3' -50.7 NC_005357.1 + 4106 0.67 0.846878
Target:  5'- gGGCGGCGCugaauucguCGCGGuCGUCGGCuuCGGu -3'
miRNA:   3'- gCUGUUGCG---------GCGCUuGUAGUUGu-GCC- -5'
26455 3' -50.7 NC_005357.1 + 4197 0.7 0.692606
Target:  5'- gGGCAuguugGCCGCGAGCA-CGuCGCGGc -3'
miRNA:   3'- gCUGUug---CGGCGCUUGUaGUuGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 4513 0.74 0.48066
Target:  5'- gGGCGGCGcCCGUGAACGUgGcguGCugGGc -3'
miRNA:   3'- gCUGUUGC-GGCGCUUGUAgU---UGugCC- -5'
26455 3' -50.7 NC_005357.1 + 4926 0.69 0.768915
Target:  5'- uCGGCAGCGaugcCCGCGAcgGUCuGCACGu -3'
miRNA:   3'- -GCUGUUGC----GGCGCUugUAGuUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 5316 0.73 0.545651
Target:  5'- aGGCcguAgGCCGCGAGCAcguggcgCAGCAUGGc -3'
miRNA:   3'- gCUGu--UgCGGCGCUUGUa------GUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 5398 0.69 0.744444
Target:  5'- -uGC-GCGCCGCGAGCAccuUCugcguacgcuccacGGCGCGGa -3'
miRNA:   3'- gcUGuUGCGGCGCUUGU---AG--------------UUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 5803 0.77 0.329225
Target:  5'- gCGGCAGCGCCaGCGGAUAgUCgGGCAUGGc -3'
miRNA:   3'- -GCUGUUGCGG-CGCUUGU-AG-UUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 5917 0.69 0.779314
Target:  5'- cCGGCAucuuuuCGCCGCuGGcgGCAUCccagacguACACGGg -3'
miRNA:   3'- -GCUGUu-----GCGGCG-CU--UGUAGu-------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 6439 0.66 0.916193
Target:  5'- gCGACAccacCGcCCGCGAagGCGUCGccgucGCGCaGGa -3'
miRNA:   3'- -GCUGUu---GC-GGCGCU--UGUAGU-----UGUG-CC- -5'
26455 3' -50.7 NC_005357.1 + 7068 0.67 0.87243
Target:  5'- gCGGCAGCGUCGUuuGAACA--GGCugGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCG--CUUGUagUUG--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.