miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 14379 0.69 0.7466
Target:  5'- gGGCAuccGCGCCGCGGaacguagGCGUagcgaAGCugGGc -3'
miRNA:   3'- gCUGU---UGCGGCGCU-------UGUAg----UUGugCC- -5'
26455 3' -50.7 NC_005357.1 + 39608 0.71 0.621168
Target:  5'- -cGCGugGCCGCGAGCAccuggcccgacgaaUCGACGaagUGGg -3'
miRNA:   3'- gcUGUugCGGCGCUUGU--------------AGUUGU---GCC- -5'
26455 3' -50.7 NC_005357.1 + 1047 0.71 0.647348
Target:  5'- gCGGCAGCaugucGCCGCGAaccgGCGUCcaguaacgcGCGCGGu -3'
miRNA:   3'- -GCUGUUG-----CGGCGCU----UGUAGu--------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 25776 0.71 0.647348
Target:  5'- gCGGCAACgaugGCCGCGAugcGCG-CGGCGCGc -3'
miRNA:   3'- -GCUGUUG----CGGCGCU---UGUaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 36968 0.71 0.681355
Target:  5'- aCGACcGCGgCGUGAugGUCGAUACc- -3'
miRNA:   3'- -GCUGuUGCgGCGCUugUAGUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 9209 0.7 0.692606
Target:  5'- uCGGCGGCGCgGCGcACGUucugCGGCGCGc -3'
miRNA:   3'- -GCUGUUGCGgCGCuUGUA----GUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 28720 0.7 0.722637
Target:  5'- uGuCGGCGCaCGCGAggaugagcgccuugGCAUCGuccaGCGCGGu -3'
miRNA:   3'- gCuGUUGCG-GCGCU--------------UGUAGU----UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 17197 0.7 0.725935
Target:  5'- uGAUuuCGCCGCcgccgaagGAGCGUUgcagGACGCGGa -3'
miRNA:   3'- gCUGuuGCGGCG--------CUUGUAG----UUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 41546 0.7 0.725935
Target:  5'- -aACAACGCgGCGGcccuCGUCGAUAgGGa -3'
miRNA:   3'- gcUGUUGCGgCGCUu---GUAGUUGUgCC- -5'
26455 3' -50.7 NC_005357.1 + 22850 0.72 0.612068
Target:  5'- cCGACAgcgcGCGCUGCGAAUugggcugcuucugGUUcGCGCGGu -3'
miRNA:   3'- -GCUGU----UGCGGCGCUUG-------------UAGuUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 27502 0.72 0.601845
Target:  5'- cCGGCGGCcucgGCCGCcAGCuucUCGGCGCGGu -3'
miRNA:   3'- -GCUGUUG----CGGCGcUUGu--AGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 20759 0.73 0.556779
Target:  5'- aGGCGcuGCGCCGCGcucGAC-UCAucGCGCGGc -3'
miRNA:   3'- gCUGU--UGCGGCGC---UUGuAGU--UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 27780 0.76 0.369878
Target:  5'- gGACAcguacacgaagcgcGCGCCGCGcAGCcgCAGCACGu -3'
miRNA:   3'- gCUGU--------------UGCGGCGC-UUGuaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 35302 0.76 0.372587
Target:  5'- cCGACGACuUCGCGGACGUgAGCGgGGa -3'
miRNA:   3'- -GCUGUUGcGGCGCUUGUAgUUGUgCC- -5'
26455 3' -50.7 NC_005357.1 + 22784 0.76 0.381713
Target:  5'- gGuCAACGCCcuGCGGGCcgGUCAGCAUGGu -3'
miRNA:   3'- gCuGUUGCGG--CGCUUG--UAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 621 0.75 0.449597
Target:  5'- -aGCAGCGCCGUGGACA-CGGCGucCGGc -3'
miRNA:   3'- gcUGUUGCGGCGCUUGUaGUUGU--GCC- -5'
26455 3' -50.7 NC_005357.1 + 15209 0.75 0.449597
Target:  5'- cCGAUGGCGauuuCCGCcGACAUCGACACGa -3'
miRNA:   3'- -GCUGUUGC----GGCGcUUGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 20867 0.75 0.449597
Target:  5'- aCGACGgcgcGCGCCGUGAuu-UCGAcCACGGa -3'
miRNA:   3'- -GCUGU----UGCGGCGCUuguAGUU-GUGCC- -5'
26455 3' -50.7 NC_005357.1 + 4513 0.74 0.48066
Target:  5'- gGGCGGCGcCCGUGAACGUgGcguGCugGGc -3'
miRNA:   3'- gCUGUUGC-GGCGCUUGUAgU---UGugCC- -5'
26455 3' -50.7 NC_005357.1 + 3533 0.73 0.545651
Target:  5'- gCGACGugccguuccagGCGCCGcCGAAUAgcgCAGCAgCGGg -3'
miRNA:   3'- -GCUGU-----------UGCGGC-GCUUGUa--GUUGU-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.