Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26455 | 3' | -50.7 | NC_005357.1 | + | 37152 | 1.11 | 0.001887 |
Target: 5'- cCGACAACGCCGCGAACAUCAACACGGu -3' miRNA: 3'- -GCUGUUGCGGCGCUUGUAGUUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 37273 | 0.71 | 0.635967 |
Target: 5'- aGGCAAUGCgGCaAACAUCAACGuCGu -3' miRNA: 3'- gCUGUUGCGgCGcUUGUAGUUGU-GCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 14032 | 0.71 | 0.681355 |
Target: 5'- uGGCGccGCGCCGCcGGCGUCgAACugGa -3' miRNA: 3'- gCUGU--UGCGGCGcUUGUAG-UUGugCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 33649 | 0.66 | 0.916193 |
Target: 5'- cCGACccaucguGCGCCGCGuGCugcccgaagCGGCACGu -3' miRNA: 3'- -GCUGu------UGCGGCGCuUGua-------GUUGUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 25023 | 0.79 | 0.27497 |
Target: 5'- aCGugGGCGCCGCuGAaucgaagcgguGCGUCGGCGCGa -3' miRNA: 3'- -GCugUUGCGGCG-CU-----------UGUAGUUGUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 5803 | 0.77 | 0.329225 |
Target: 5'- gCGGCAGCGCCaGCGGAUAgUCgGGCAUGGc -3' miRNA: 3'- -GCUGUUGCGG-CGCUUGU-AG-UUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 20015 | 0.74 | 0.470187 |
Target: 5'- aGGCGugGCUgGCGAACGUCA-CGCGc -3' miRNA: 3'- gCUGUugCGG-CGCUUGUAGUuGUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 20768 | 0.74 | 0.491246 |
Target: 5'- uCGugGACGUgCGCGAgcGCAUCAAgGCGa -3' miRNA: 3'- -GCugUUGCG-GCGCU--UGUAGUUgUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 5316 | 0.73 | 0.545651 |
Target: 5'- aGGCcguAgGCCGCGAGCAcguggcgCAGCAUGGc -3' miRNA: 3'- gCUGu--UgCGGCGCUUGUa------GUUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 29239 | 0.72 | 0.613205 |
Target: 5'- gCGuACAACGCCGgccaaGGGCGccCAGCGCGGc -3' miRNA: 3'- -GC-UGUUGCGGCg----CUUGUa-GUUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 35234 | 0.72 | 0.589381 |
Target: 5'- gGACAucGCGCUGUcccggcugcgucaGGGCGUCAGCGCGu -3' miRNA: 3'- gCUGU--UGCGGCG-------------CUUGUAGUUGUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 19331 | 0.73 | 0.512733 |
Target: 5'- cCGugGGCGCCGCcguuGGCGUCGGgGCGa -3' miRNA: 3'- -GCugUUGCGGCGc---UUGUAGUUgUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 8429 | 0.81 | 0.188185 |
Target: 5'- gCGGgGGCGUCGCgGAACAUCGGCGCGa -3' miRNA: 3'- -GCUgUUGCGGCG-CUUGUAGUUGUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 14616 | 0.72 | 0.590513 |
Target: 5'- gGGCAGCGCgCGCGAggacgugcuGCGgcuGCGCGGc -3' miRNA: 3'- gCUGUUGCG-GCGCU---------UGUaguUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 36820 | 0.81 | 0.20113 |
Target: 5'- --uCGACGCCguggcuaccaacgagGCGGACAUCGACACGGu -3' miRNA: 3'- gcuGUUGCGG---------------CGCUUGUAGUUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 8738 | 0.74 | 0.491246 |
Target: 5'- cCGGCgGGCGCgGCGcuacCGUCAACAUGGa -3' miRNA: 3'- -GCUG-UUGCGgCGCuu--GUAGUUGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 9883 | 0.72 | 0.597308 |
Target: 5'- gCGGCAuCGCCgGCGGcagcauccuggccgGCAUCAccagccuGCACGGg -3' miRNA: 3'- -GCUGUuGCGG-CGCU--------------UGUAGU-------UGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 3193 | 0.71 | 0.670053 |
Target: 5'- -uGCAcACGCaCGCGGGCAuuuUCAACACGc -3' miRNA: 3'- gcUGU-UGCG-GCGCUUGU---AGUUGUGCc -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 9806 | 0.79 | 0.27497 |
Target: 5'- gGACAGCGaCCGCG-GCGUCGcggcccuugACGCGGg -3' miRNA: 3'- gCUGUUGC-GGCGCuUGUAGU---------UGUGCC- -5' |
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26455 | 3' | -50.7 | NC_005357.1 | + | 37362 | 0.75 | 0.449597 |
Target: 5'- uCGGCAAUGCCGacAACAUCAAUgcaGCGGu -3' miRNA: 3'- -GCUGUUGCGGCgcUUGUAGUUG---UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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