miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 41546 0.7 0.725935
Target:  5'- -aACAACGCgGCGGcccuCGUCGAUAgGGa -3'
miRNA:   3'- gcUGUUGCGgCGCUu---GUAGUUGUgCC- -5'
26455 3' -50.7 NC_005357.1 + 41328 0.68 0.837866
Target:  5'- gCGAC-AUGCCGCG-----CGACACGGc -3'
miRNA:   3'- -GCUGuUGCGGCGCuuguaGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 40148 0.67 0.859087
Target:  5'- uCGACcGCGCggcacuguaCGCGAugAUCGacaagaagauucauuGCGCGGc -3'
miRNA:   3'- -GCUGuUGCG---------GCGCUugUAGU---------------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 40044 0.71 0.681355
Target:  5'- uGACAaggguACGCaCGCGGGCGUCugcCACGu -3'
miRNA:   3'- gCUGU-----UGCG-GCGCUUGUAGuu-GUGCc -5'
26455 3' -50.7 NC_005357.1 + 39608 0.71 0.621168
Target:  5'- -cGCGugGCCGCGAGCAccuggcccgacgaaUCGACGaagUGGg -3'
miRNA:   3'- gcUGUugCGGCGCUUGU--------------AGUUGU---GCC- -5'
26455 3' -50.7 NC_005357.1 + 39514 0.67 0.855648
Target:  5'- uCGAacuCGaaCGCGAACAUCGgggcGCGCGGc -3'
miRNA:   3'- -GCUguuGCg-GCGCUUGUAGU----UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 38494 0.67 0.846878
Target:  5'- -uACAACGUgaccauCGCGGACggCAGCGCGu -3'
miRNA:   3'- gcUGUUGCG------GCGCUUGuaGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 38081 0.69 0.758364
Target:  5'- cCGGCAACGCaacgGCcAGCAUCAAgGCuGGc -3'
miRNA:   3'- -GCUGUUGCGg---CGcUUGUAGUUgUG-CC- -5'
26455 3' -50.7 NC_005357.1 + 37916 0.67 0.850416
Target:  5'- gCGAUgcgccaagcgccuguGGCGCCGCGcGCAUCcg-GCGGu -3'
miRNA:   3'- -GCUG---------------UUGCGGCGCuUGUAGuugUGCC- -5'
26455 3' -50.7 NC_005357.1 + 37668 0.68 0.819159
Target:  5'- gGGCgAACGCCGaGAACAUC---GCGGc -3'
miRNA:   3'- gCUG-UUGCGGCgCUUGUAGuugUGCC- -5'
26455 3' -50.7 NC_005357.1 + 37474 0.67 0.846878
Target:  5'- -aGCAGCGCgauaCGCGGcuGCAUCGugGCGc -3'
miRNA:   3'- gcUGUUGCG----GCGCU--UGUAGUugUGCc -5'
26455 3' -50.7 NC_005357.1 + 37445 0.68 0.828623
Target:  5'- gCGGUAGCGgCGaaCGAaggaaACGUCAACACGGu -3'
miRNA:   3'- -GCUGUUGCgGC--GCU-----UGUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 37362 0.75 0.449597
Target:  5'- uCGGCAAUGCCGacAACAUCAAUgcaGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCgcUUGUAGUUG---UGCC- -5'
26455 3' -50.7 NC_005357.1 + 37326 0.66 0.902747
Target:  5'- nGACcGCuGCUaaccaaGCGAACAUCAAUgcaGCGGn -3'
miRNA:   3'- gCUGuUG-CGG------CGCUUGUAGUUG---UGCC- -5'
26455 3' -50.7 NC_005357.1 + 37302 0.71 0.681355
Target:  5'- cCGACAACGCa--GAcaACAUCAAUGCGa -3'
miRNA:   3'- -GCUGUUGCGgcgCU--UGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 37273 0.71 0.635967
Target:  5'- aGGCAAUGCgGCaAACAUCAACGuCGu -3'
miRNA:   3'- gCUGUUGCGgCGcUUGUAGUUGU-GCc -5'
26455 3' -50.7 NC_005357.1 + 37152 1.11 0.001887
Target:  5'- cCGACAACGCCGCGAACAUCAACACGGu -3'
miRNA:   3'- -GCUGUUGCGGCGCUUGUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 37041 0.66 0.895589
Target:  5'- uCGGCGACGUgaGCac-CGUCAGCACGc -3'
miRNA:   3'- -GCUGUUGCGg-CGcuuGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 36968 0.71 0.681355
Target:  5'- aCGACcGCGgCGUGAugGUCGAUACc- -3'
miRNA:   3'- -GCUGuUGCgGCGCUugUAGUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 36868 0.66 0.895589
Target:  5'- gCGuuGGCGCCGUcGAUAcCGugGCGGg -3'
miRNA:   3'- -GCugUUGCGGCGcUUGUaGUugUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.