miRNA display CGI


Results 21 - 40 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 36820 0.81 0.20113
Target:  5'- --uCGACGCCguggcuaccaacgagGCGGACAUCGACACGGu -3'
miRNA:   3'- gcuGUUGCGG---------------CGCUUGUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 36639 0.68 0.837866
Target:  5'- uGGCGcUGCCGCGAugGCGg-GACACGa -3'
miRNA:   3'- gCUGUuGCGGCGCU--UGUagUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 36342 0.68 0.828623
Target:  5'- -cGCAAgGCCGCGcucGACGacuUCGAgGCGGu -3'
miRNA:   3'- gcUGUUgCGGCGC---UUGU---AGUUgUGCC- -5'
26455 3' -50.7 NC_005357.1 + 36040 0.67 0.87243
Target:  5'- cCGAgGGCGCCGCG-GCGgcCGACcUGGu -3'
miRNA:   3'- -GCUgUUGCGGCGCuUGUa-GUUGuGCC- -5'
26455 3' -50.7 NC_005357.1 + 36021 0.66 0.902747
Target:  5'- aCGACAugGgCCGCGAcuACAccgggcCGGC-CGGc -3'
miRNA:   3'- -GCUGUugC-GGCGCU--UGUa-----GUUGuGCC- -5'
26455 3' -50.7 NC_005357.1 + 35983 0.68 0.819159
Target:  5'- aCGGCGACGCCuucGCGGGCGgugguguCGCGa -3'
miRNA:   3'- -GCUGUUGCGG---CGCUUGUaguu---GUGCc -5'
26455 3' -50.7 NC_005357.1 + 35767 0.67 0.87243
Target:  5'- uCGGCGugG-CGCaGAcCAUgAGCGCGGa -3'
miRNA:   3'- -GCUGUugCgGCG-CUuGUAgUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 35341 0.66 0.909616
Target:  5'- gCGugGgcGCGCCGUGggUAggc-CGCGGc -3'
miRNA:   3'- -GCugU--UGCGGCGCuuGUaguuGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 35302 0.76 0.372587
Target:  5'- cCGACGACuUCGCGGACGUgAGCGgGGa -3'
miRNA:   3'- -GCUGUUGcGGCGCUUGUAgUUGUgCC- -5'
26455 3' -50.7 NC_005357.1 + 35234 0.72 0.589381
Target:  5'- gGACAucGCGCUGUcccggcugcgucaGGGCGUCAGCGCGu -3'
miRNA:   3'- gCUGU--UGCGGCG-------------CUUGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 35194 0.66 0.909616
Target:  5'- cCGACAuCGCCgaggGUGAGCG-CGGCGCa- -3'
miRNA:   3'- -GCUGUuGCGG----CGCUUGUaGUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 35131 0.7 0.725935
Target:  5'- uCGACGGCGCCauccGCGAGCAc---UACGGc -3'
miRNA:   3'- -GCUGUUGCGG----CGCUUGUaguuGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 34883 0.68 0.809485
Target:  5'- aCGACccgGCCGCGAGC--CAGCguGCGGa -3'
miRNA:   3'- -GCUGuugCGGCGCUUGuaGUUG--UGCC- -5'
26455 3' -50.7 NC_005357.1 + 34879 0.69 0.779314
Target:  5'- cCGGUGGCGCCGCGGAUcgagCAcgccgccgagcGCACGGu -3'
miRNA:   3'- -GCUGUUGCGGCGCUUGua--GU-----------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 34367 0.68 0.828623
Target:  5'- aGGCAGCGaCCuggGCGcGCGUCAugGaCGGc -3'
miRNA:   3'- gCUGUUGC-GG---CGCuUGUAGUugU-GCC- -5'
26455 3' -50.7 NC_005357.1 + 34193 0.66 0.888146
Target:  5'- gCGACuuCGCCGaCGAG----GGCACGGc -3'
miRNA:   3'- -GCUGuuGCGGC-GCUUguagUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 33910 0.7 0.713801
Target:  5'- gGGCAAguuCGCCgGCGAcaucaggGCAUCGACGUGGa -3'
miRNA:   3'- gCUGUU---GCGG-CGCU-------UGUAGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 33649 0.66 0.916193
Target:  5'- cCGACccaucguGCGCCGCGuGCugcccgaagCGGCACGu -3'
miRNA:   3'- -GCUGu------UGCGGCGCuUGua-------GUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 33211 0.66 0.916193
Target:  5'- gGGC-GCGCCGCaGAACGUgCGcCGCGc -3'
miRNA:   3'- gCUGuUGCGGCG-CUUGUA-GUuGUGCc -5'
26455 3' -50.7 NC_005357.1 + 32699 0.67 0.87243
Target:  5'- cCGACGugcuCGCCGCGuGCAaUCAgGCgAUGGa -3'
miRNA:   3'- -GCUGUu---GCGGCGCuUGU-AGU-UG-UGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.