miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 26243 0.66 0.916193
Target:  5'- aUGGCGcgugGCGUCgGUGAACucCGACGCGGu -3'
miRNA:   3'- -GCUGU----UGCGG-CGCUUGuaGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 33211 0.66 0.916193
Target:  5'- gGGC-GCGCCGCaGAACGUgCGcCGCGc -3'
miRNA:   3'- gCUGuUGCGGCG-CUUGUA-GUuGUGCc -5'
26455 3' -50.7 NC_005357.1 + 32558 0.66 0.916193
Target:  5'- cCGGCGAUGCCGCuccGACGuaUCAGgACa- -3'
miRNA:   3'- -GCUGUUGCGGCGc--UUGU--AGUUgUGcc -5'
26455 3' -50.7 NC_005357.1 + 8465 0.66 0.916193
Target:  5'- uCGAgGugGCCuGCGAugccGCAgcCGACGCGa -3'
miRNA:   3'- -GCUgUugCGG-CGCU----UGUa-GUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 29550 0.66 0.916193
Target:  5'- gGACAcccACGCCGUGcucgggguaucGCGUCAGguCGGc -3'
miRNA:   3'- gCUGU---UGCGGCGCu----------UGUAGUUguGCC- -5'
26455 3' -50.7 NC_005357.1 + 6439 0.66 0.916193
Target:  5'- gCGACAccacCGcCCGCGAagGCGUCGccgucGCGCaGGa -3'
miRNA:   3'- -GCUGUu---GC-GGCGCU--UGUAGU-----UGUG-CC- -5'
26455 3' -50.7 NC_005357.1 + 33649 0.66 0.916193
Target:  5'- cCGACccaucguGCGCCGCGuGCugcccgaagCGGCACGu -3'
miRNA:   3'- -GCUGu------UGCGGCGCuUGua-------GUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 21160 0.66 0.916193
Target:  5'- cCGACAcuuACGCCGacaugcuGGGCAUCGACccCGa -3'
miRNA:   3'- -GCUGU---UGCGGCg------CUUGUAGUUGu-GCc -5'
26455 3' -50.7 NC_005357.1 + 24835 0.66 0.915549
Target:  5'- uCGACAACGCgcagccguuuagcUGCGAA-AUCGACAacacCGGc -3'
miRNA:   3'- -GCUGUUGCG-------------GCGCUUgUAGUUGU----GCC- -5'
26455 3' -50.7 NC_005357.1 + 12306 0.66 0.915549
Target:  5'- cCGGCGGCGUguucuggCGCGGccuCAUCGcCugGGa -3'
miRNA:   3'- -GCUGUUGCG-------GCGCUu--GUAGUuGugCC- -5'
26455 3' -50.7 NC_005357.1 + 28591 0.66 0.914251
Target:  5'- cCGGCAGCGUgGUGucgGUCAguuccuugaaccggGCGCGGa -3'
miRNA:   3'- -GCUGUUGCGgCGCuugUAGU--------------UGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 35194 0.66 0.909616
Target:  5'- cCGACAuCGCCgaggGUGAGCG-CGGCGCa- -3'
miRNA:   3'- -GCUGUuGCGG----CGCUUGUaGUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 35341 0.66 0.909616
Target:  5'- gCGugGgcGCGCCGUGggUAggc-CGCGGc -3'
miRNA:   3'- -GCugU--UGCGGCGCuuGUaguuGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 18183 0.66 0.909616
Target:  5'- uGGCAA-GCCGCGAggACAUCAu--CGa -3'
miRNA:   3'- gCUGUUgCGGCGCU--UGUAGUuguGCc -5'
26455 3' -50.7 NC_005357.1 + 17759 0.66 0.909616
Target:  5'- gGACGugGCCcgcgGCGGGCGcgaCAACACc- -3'
miRNA:   3'- gCUGUugCGG----CGCUUGUa--GUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 10957 0.66 0.908942
Target:  5'- gCGGCGACaGCCGgGGACAcugggccaccuguUCGGCcaggcCGGa -3'
miRNA:   3'- -GCUGUUG-CGGCgCUUGU-------------AGUUGu----GCC- -5'
26455 3' -50.7 NC_005357.1 + 8287 0.66 0.902747
Target:  5'- gGGCcACGCUGCcgGGGCAgugCAGCcaGCGGu -3'
miRNA:   3'- gCUGuUGCGGCG--CUUGUa--GUUG--UGCC- -5'
26455 3' -50.7 NC_005357.1 + 36021 0.66 0.902747
Target:  5'- aCGACAugGgCCGCGAcuACAccgggcCGGC-CGGc -3'
miRNA:   3'- -GCUGUugC-GGCGCU--UGUa-----GUUGuGCC- -5'
26455 3' -50.7 NC_005357.1 + 23148 0.66 0.902747
Target:  5'- gCGACcACGCUguucuacgGCGAuuccaGCAUCGACGCc- -3'
miRNA:   3'- -GCUGuUGCGG--------CGCU-----UGUAGUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 7219 0.66 0.902747
Target:  5'- aCGGCAgcaucuGCGCCGCGcuCAcccUCGGCGauguCGGc -3'
miRNA:   3'- -GCUGU------UGCGGCGCuuGU---AGUUGU----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.