miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26455 3' -50.7 NC_005357.1 + 8287 0.66 0.902747
Target:  5'- gGGCcACGCUGCcgGGGCAgugCAGCcaGCGGu -3'
miRNA:   3'- gCUGuUGCGGCG--CUUGUa--GUUG--UGCC- -5'
26455 3' -50.7 NC_005357.1 + 23148 0.66 0.902747
Target:  5'- gCGACcACGCUguucuacgGCGAuuccaGCAUCGACGCc- -3'
miRNA:   3'- -GCUGuUGCGG--------CGCU-----UGUAGUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 19607 0.66 0.902044
Target:  5'- uCGGCAGCGCgGCGAAgucgggcCAgucCGGCACc- -3'
miRNA:   3'- -GCUGUUGCGgCGCUU-------GUa--GUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 27621 0.66 0.895589
Target:  5'- aGGCAGCGCCGcCGAgguGCAgguuuccagCGACAUc- -3'
miRNA:   3'- gCUGUUGCGGC-GCU---UGUa--------GUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 36868 0.66 0.895589
Target:  5'- gCGuuGGCGCCGUcGAUAcCGugGCGGg -3'
miRNA:   3'- -GCugUUGCGGCGcUUGUaGUugUGCC- -5'
26455 3' -50.7 NC_005357.1 + 27850 0.66 0.895589
Target:  5'- gGAUcg-GCCGCcGGCAUCAGCcCGGu -3'
miRNA:   3'- gCUGuugCGGCGcUUGUAGUUGuGCC- -5'
26455 3' -50.7 NC_005357.1 + 2428 0.66 0.895589
Target:  5'- aCGGCAGCagGCCGgccuCGAAgAUCGGCGCc- -3'
miRNA:   3'- -GCUGUUG--CGGC----GCUUgUAGUUGUGcc -5'
26455 3' -50.7 NC_005357.1 + 37041 0.66 0.895589
Target:  5'- uCGGCGACGUgaGCac-CGUCAGCACGc -3'
miRNA:   3'- -GCUGUUGCGg-CGcuuGUAGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 31431 0.66 0.888146
Target:  5'- aCGGCGACGCCaCGAucugCGGCGUGGu -3'
miRNA:   3'- -GCUGUUGCGGcGCUuguaGUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 28504 0.66 0.888146
Target:  5'- -cACGGCGCUGCGcGACAUCGcccugaACugGa -3'
miRNA:   3'- gcUGUUGCGGCGC-UUGUAGU------UGugCc -5'
26455 3' -50.7 NC_005357.1 + 21653 0.66 0.888146
Target:  5'- gGACGugcaGCCGCGcGAUgaGUCgAGCGCGGc -3'
miRNA:   3'- gCUGUug--CGGCGC-UUG--UAG-UUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 18391 0.66 0.888146
Target:  5'- cCGAUGGCGCCggugGCGGccACGUCGGCgaaGGu -3'
miRNA:   3'- -GCUGUUGCGG----CGCU--UGUAGUUGug-CC- -5'
26455 3' -50.7 NC_005357.1 + 34193 0.66 0.888146
Target:  5'- gCGACuuCGCCGaCGAG----GGCACGGc -3'
miRNA:   3'- -GCUGuuGCGGC-GCUUguagUUGUGCC- -5'
26455 3' -50.7 NC_005357.1 + 32588 0.66 0.888146
Target:  5'- cCGcCGACGCUGUGAccaagcuggcccGCGUCAAgggccgcgacgcCGCGGu -3'
miRNA:   3'- -GCuGUUGCGGCGCU------------UGUAGUU------------GUGCC- -5'
26455 3' -50.7 NC_005357.1 + 18465 0.66 0.888146
Target:  5'- -cGCGGCGCCgGCGG-CGUCGGC-CGa -3'
miRNA:   3'- gcUGUUGCGG-CGCUuGUAGUUGuGCc -5'
26455 3' -50.7 NC_005357.1 + 31548 0.67 0.878055
Target:  5'- gGAauACGCCGCGcGCAUCGcgccgaccgaagccACGCaGGg -3'
miRNA:   3'- gCUguUGCGGCGCuUGUAGU--------------UGUG-CC- -5'
26455 3' -50.7 NC_005357.1 + 32699 0.67 0.87243
Target:  5'- cCGACGugcuCGCCGCGuGCAaUCAgGCgAUGGa -3'
miRNA:   3'- -GCUGUu---GCGGCGCuUGU-AGU-UG-UGCC- -5'
26455 3' -50.7 NC_005357.1 + 7068 0.67 0.87243
Target:  5'- gCGGCAGCGUCGUuuGAACA--GGCugGCGGu -3'
miRNA:   3'- -GCUGUUGCGGCG--CUUGUagUUG--UGCC- -5'
26455 3' -50.7 NC_005357.1 + 29882 0.67 0.87243
Target:  5'- cCGGCAagaaauucaccgACGCCGagguCGAGCAgcaccUCGACGCGc -3'
miRNA:   3'- -GCUGU------------UGCGGC----GCUUGU-----AGUUGUGCc -5'
26455 3' -50.7 NC_005357.1 + 1373 0.67 0.87243
Target:  5'- uGACAuaggGCGCCGCGGccACGcgCAcaACGGu -3'
miRNA:   3'- gCUGU----UGCGGCGCU--UGUa-GUugUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.