miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 3' -57.1 NC_005357.1 + 391 0.76 0.118744
Target:  5'- uGAGCGCgGcCAGCGCGCGaCUGUUGAg -3'
miRNA:   3'- -CUCGUGgCaGUCGUGCGUgGACAGCU- -5'
26456 3' -57.1 NC_005357.1 + 413 0.67 0.487292
Target:  5'- cAGCACggcggugauCGUCGGC-CGUACCuUGUCGu -3'
miRNA:   3'- cUCGUG---------GCAGUCGuGCGUGG-ACAGCu -5'
26456 3' -57.1 NC_005357.1 + 3566 0.69 0.371597
Target:  5'- -cGCGCCGcauaaauuUCAGCgACGCGCCggGUCa- -3'
miRNA:   3'- cuCGUGGC--------AGUCG-UGCGUGGa-CAGcu -5'
26456 3' -57.1 NC_005357.1 + 3869 0.67 0.466771
Target:  5'- aGGCGCCGUCgcuguaGGcCGCGCugCcGUCGc -3'
miRNA:   3'- cUCGUGGCAG------UC-GUGCGugGaCAGCu -5'
26456 3' -57.1 NC_005357.1 + 4195 0.74 0.180491
Target:  5'- uGGGCGCCGaaaaguuggaaUCGGCGCGCACCgugccaucGUCGc -3'
miRNA:   3'- -CUCGUGGC-----------AGUCGUGCGUGGa-------CAGCu -5'
26456 3' -57.1 NC_005357.1 + 4459 0.68 0.417535
Target:  5'- uGGCACCGUCAuGCACaacgaccguGUuCUUGUCGGu -3'
miRNA:   3'- cUCGUGGCAGU-CGUG---------CGuGGACAGCU- -5'
26456 3' -57.1 NC_005357.1 + 5109 0.7 0.313305
Target:  5'- cAGCGuCCGgugCGGCugGCGCC-GUUGAa -3'
miRNA:   3'- cUCGU-GGCa--GUCGugCGUGGaCAGCU- -5'
26456 3' -57.1 NC_005357.1 + 6703 0.66 0.497711
Target:  5'- aGGCACaccuuGUCcugGGCGCGCAUCUGcUUGAg -3'
miRNA:   3'- cUCGUGg----CAG---UCGUGCGUGGAC-AGCU- -5'
26456 3' -57.1 NC_005357.1 + 8663 0.67 0.487292
Target:  5'- -cGCGCgGUCGGCauugcgugccgcGCGCACCUcggcGUUGGu -3'
miRNA:   3'- cuCGUGgCAGUCG------------UGCGUGGA----CAGCU- -5'
26456 3' -57.1 NC_005357.1 + 9186 0.66 0.508229
Target:  5'- uGGCGCCGUCG--ACGUugGCCUGcUCGGc -3'
miRNA:   3'- cUCGUGGCAGUcgUGCG--UGGAC-AGCU- -5'
26456 3' -57.1 NC_005357.1 + 12617 0.67 0.466771
Target:  5'- uGGCGCCGacgcgcUCGGCAuCGCugCUGcCGu -3'
miRNA:   3'- cUCGUGGC------AGUCGU-GCGugGACaGCu -5'
26456 3' -57.1 NC_005357.1 + 13289 0.66 0.540313
Target:  5'- cAGCGCCGauugCAGCGCGCcgggGCCggcGUUGu -3'
miRNA:   3'- cUCGUGGCa---GUCGUGCG----UGGa--CAGCu -5'
26456 3' -57.1 NC_005357.1 + 14641 0.67 0.476977
Target:  5'- cGGCugCG-CGGCGCGCGCUucguguacgUGUcCGAg -3'
miRNA:   3'- cUCGugGCaGUCGUGCGUGG---------ACA-GCU- -5'
26456 3' -57.1 NC_005357.1 + 14730 0.69 0.354211
Target:  5'- cGAGcCGCUGcCGGCGCGCgGCCUGUa-- -3'
miRNA:   3'- -CUC-GUGGCaGUCGUGCG-UGGACAgcu -5'
26456 3' -57.1 NC_005357.1 + 15570 0.71 0.255489
Target:  5'- uGGCGCCGUCAGUgacgACGCGCUg--CGGa -3'
miRNA:   3'- cUCGUGGCAGUCG----UGCGUGGacaGCU- -5'
26456 3' -57.1 NC_005357.1 + 16943 0.7 0.313305
Target:  5'- cGGCGCCGUcCAGCAgCGUGCCgcGUUGGu -3'
miRNA:   3'- cUCGUGGCA-GUCGU-GCGUGGa-CAGCU- -5'
26456 3' -57.1 NC_005357.1 + 18117 0.71 0.276079
Target:  5'- -cGCGCCGUcCGGUACGUcgaACUUGUCGc -3'
miRNA:   3'- cuCGUGGCA-GUCGUGCG---UGGACAGCu -5'
26456 3' -57.1 NC_005357.1 + 19334 0.68 0.421358
Target:  5'- uGGGCGCCGcCguuggcgucggggcgAGCAUGUACaUGUCGAa -3'
miRNA:   3'- -CUCGUGGCaG---------------UCGUGCGUGgACAGCU- -5'
26456 3' -57.1 NC_005357.1 + 19593 0.66 0.529536
Target:  5'- -cGCGCUGUCGGCugucggcaGCGCGgCgaaGUCGGg -3'
miRNA:   3'- cuCGUGGCAGUCG--------UGCGUgGa--CAGCU- -5'
26456 3' -57.1 NC_005357.1 + 20748 0.7 0.313305
Target:  5'- uGGCGCCGUagaGGCGCuGCGCCgcgcUCGAc -3'
miRNA:   3'- cUCGUGGCAg--UCGUG-CGUGGac--AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.