Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 22070 | 0.66 | 0.551163 |
Target: 5'- cGGGuCGCgGUCGGCGCGCGgC--UCGAu -3' miRNA: 3'- -CUC-GUGgCAGUCGUGCGUgGacAGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 22531 | 0.75 | 0.13676 |
Target: 5'- cGAGCACgCG-CAGCGCGCGCgugccggugUUGUCGAg -3' miRNA: 3'- -CUCGUG-GCaGUCGUGCGUG---------GACAGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 23420 | 0.67 | 0.456679 |
Target: 5'- -cGCGCCgGUCAGUGCGaCGCCgGcCGGg -3' miRNA: 3'- cuCGUGG-CAGUCGUGC-GUGGaCaGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 25043 | 0.66 | 0.529536 |
Target: 5'- aAGCGgugCGUCGGCGCGaugcaggcaUACCUGUCGc -3' miRNA: 3'- cUCGUg--GCAGUCGUGC---------GUGGACAGCu -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 26320 | 0.66 | 0.551163 |
Target: 5'- aGGCACgGUCuuGaCGCGCACCg--CGAa -3' miRNA: 3'- cUCGUGgCAGu-C-GUGCGUGGacaGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 26736 | 0.69 | 0.371597 |
Target: 5'- cGGGcCACCGcCAGCGCGCcCgCUG-CGAu -3' miRNA: 3'- -CUC-GUGGCaGUCGUGCGuG-GACaGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 27474 | 0.67 | 0.466771 |
Target: 5'- -cGCGCCG-C-GCACGCACCacgCGAg -3' miRNA: 3'- cuCGUGGCaGuCGUGCGUGGacaGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 28008 | 0.68 | 0.417535 |
Target: 5'- cGGUGCCG-CAG-GCGCGCCUGgCGAc -3' miRNA: 3'- cUCGUGGCaGUCgUGCGUGGACaGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 28944 | 0.66 | 0.529536 |
Target: 5'- aGGCGCgGUCGGCAuCGC-CCagGUCa- -3' miRNA: 3'- cUCGUGgCAGUCGU-GCGuGGa-CAGcu -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 30470 | 0.69 | 0.362832 |
Target: 5'- gGGGCGCCgGUCAuCGCGuCACCUGcUGAa -3' miRNA: 3'- -CUCGUGG-CAGUcGUGC-GUGGACaGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 33851 | 0.67 | 0.476977 |
Target: 5'- -cGCcgugACCGUCGuGU-CGCGCCUGUCGc -3' miRNA: 3'- cuCG----UGGCAGU-CGuGCGUGGACAGCu -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 36872 | 0.68 | 0.427131 |
Target: 5'- uGGCGCCGUCgauaccguGGCGgGCgACCUGggCGGa -3' miRNA: 3'- cUCGUGGCAG--------UCGUgCG-UGGACa-GCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 37050 | 1.08 | 0.000482 |
Target: 5'- uGAGCACCGUCAGCACGCACCUGUCGAg -3' miRNA: 3'- -CUCGUGGCAGUCGUGCGUGGACAGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 38726 | 0.66 | 0.518839 |
Target: 5'- -uGCGCCGcauggggCAGCGCGuCGCCgugGUgGAu -3' miRNA: 3'- cuCGUGGCa------GUCGUGC-GUGGa--CAgCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home