miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 3' -57.1 NC_005357.1 + 22070 0.66 0.551163
Target:  5'- cGGGuCGCgGUCGGCGCGCGgC--UCGAu -3'
miRNA:   3'- -CUC-GUGgCAGUCGUGCGUgGacAGCU- -5'
26456 3' -57.1 NC_005357.1 + 22531 0.75 0.13676
Target:  5'- cGAGCACgCG-CAGCGCGCGCgugccggugUUGUCGAg -3'
miRNA:   3'- -CUCGUG-GCaGUCGUGCGUG---------GACAGCU- -5'
26456 3' -57.1 NC_005357.1 + 23420 0.67 0.456679
Target:  5'- -cGCGCCgGUCAGUGCGaCGCCgGcCGGg -3'
miRNA:   3'- cuCGUGG-CAGUCGUGC-GUGGaCaGCU- -5'
26456 3' -57.1 NC_005357.1 + 25043 0.66 0.529536
Target:  5'- aAGCGgugCGUCGGCGCGaugcaggcaUACCUGUCGc -3'
miRNA:   3'- cUCGUg--GCAGUCGUGC---------GUGGACAGCu -5'
26456 3' -57.1 NC_005357.1 + 26320 0.66 0.551163
Target:  5'- aGGCACgGUCuuGaCGCGCACCg--CGAa -3'
miRNA:   3'- cUCGUGgCAGu-C-GUGCGUGGacaGCU- -5'
26456 3' -57.1 NC_005357.1 + 26736 0.69 0.371597
Target:  5'- cGGGcCACCGcCAGCGCGCcCgCUG-CGAu -3'
miRNA:   3'- -CUC-GUGGCaGUCGUGCGuG-GACaGCU- -5'
26456 3' -57.1 NC_005357.1 + 27474 0.67 0.466771
Target:  5'- -cGCGCCG-C-GCACGCACCacgCGAg -3'
miRNA:   3'- cuCGUGGCaGuCGUGCGUGGacaGCU- -5'
26456 3' -57.1 NC_005357.1 + 28008 0.68 0.417535
Target:  5'- cGGUGCCG-CAG-GCGCGCCUGgCGAc -3'
miRNA:   3'- cUCGUGGCaGUCgUGCGUGGACaGCU- -5'
26456 3' -57.1 NC_005357.1 + 28944 0.66 0.529536
Target:  5'- aGGCGCgGUCGGCAuCGC-CCagGUCa- -3'
miRNA:   3'- cUCGUGgCAGUCGU-GCGuGGa-CAGcu -5'
26456 3' -57.1 NC_005357.1 + 30470 0.69 0.362832
Target:  5'- gGGGCGCCgGUCAuCGCGuCACCUGcUGAa -3'
miRNA:   3'- -CUCGUGG-CAGUcGUGC-GUGGACaGCU- -5'
26456 3' -57.1 NC_005357.1 + 33851 0.67 0.476977
Target:  5'- -cGCcgugACCGUCGuGU-CGCGCCUGUCGc -3'
miRNA:   3'- cuCG----UGGCAGU-CGuGCGUGGACAGCu -5'
26456 3' -57.1 NC_005357.1 + 36872 0.68 0.427131
Target:  5'- uGGCGCCGUCgauaccguGGCGgGCgACCUGggCGGa -3'
miRNA:   3'- cUCGUGGCAG--------UCGUgCG-UGGACa-GCU- -5'
26456 3' -57.1 NC_005357.1 + 37050 1.08 0.000482
Target:  5'- uGAGCACCGUCAGCACGCACCUGUCGAg -3'
miRNA:   3'- -CUCGUGGCAGUCGUGCGUGGACAGCU- -5'
26456 3' -57.1 NC_005357.1 + 38726 0.66 0.518839
Target:  5'- -uGCGCCGcauggggCAGCGCGuCGCCgugGUgGAu -3'
miRNA:   3'- cuCGUGGCa------GUCGUGC-GUGGa--CAgCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.