Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 23420 | 0.67 | 0.456679 |
Target: 5'- -cGCGCCgGUCAGUGCGaCGCCgGcCGGg -3' miRNA: 3'- cuCGUGG-CAGUCGUGC-GUGGaCaGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 36872 | 0.68 | 0.427131 |
Target: 5'- uGGCGCCGUCgauaccguGGCGgGCgACCUGggCGGa -3' miRNA: 3'- cUCGUGGCAG--------UCGUgCG-UGGACa-GCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 14641 | 0.67 | 0.476977 |
Target: 5'- cGGCugCG-CGGCGCGCGCUucguguacgUGUcCGAg -3' miRNA: 3'- cUCGugGCaGUCGUGCGUGG---------ACA-GCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 6703 | 0.66 | 0.497711 |
Target: 5'- aGGCACaccuuGUCcugGGCGCGCAUCUGcUUGAg -3' miRNA: 3'- cUCGUGg----CAG---UCGUGCGUGGAC-AGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 19593 | 0.66 | 0.529536 |
Target: 5'- -cGCGCUGUCGGCugucggcaGCGCGgCgaaGUCGGg -3' miRNA: 3'- cuCGUGGCAGUCG--------UGCGUgGa--CAGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 28944 | 0.66 | 0.529536 |
Target: 5'- aGGCGCgGUCGGCAuCGC-CCagGUCa- -3' miRNA: 3'- cUCGUGgCAGUCGU-GCGuGGa-CAGcu -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 19334 | 0.68 | 0.421358 |
Target: 5'- uGGGCGCCGcCguuggcgucggggcgAGCAUGUACaUGUCGAa -3' miRNA: 3'- -CUCGUGGCaG---------------UCGUGCGUGgACAGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 28008 | 0.68 | 0.417535 |
Target: 5'- cGGUGCCG-CAG-GCGCGCCUGgCGAc -3' miRNA: 3'- cUCGUGGCaGUCgUGCGUGGACaGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 3566 | 0.69 | 0.371597 |
Target: 5'- -cGCGCCGcauaaauuUCAGCgACGCGCCggGUCa- -3' miRNA: 3'- cuCGUGGC--------AGUCG-UGCGUGGa-CAGcu -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 14730 | 0.69 | 0.354211 |
Target: 5'- cGAGcCGCUGcCGGCGCGCgGCCUGUa-- -3' miRNA: 3'- -CUC-GUGGCaGUCGUGCG-UGGACAgcu -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 5109 | 0.7 | 0.313305 |
Target: 5'- cAGCGuCCGgugCGGCugGCGCC-GUUGAa -3' miRNA: 3'- cUCGU-GGCa--GUCGugCGUGGaCAGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 391 | 0.76 | 0.118744 |
Target: 5'- uGAGCGCgGcCAGCGCGCGaCUGUUGAg -3' miRNA: 3'- -CUCGUGgCaGUCGUGCGUgGACAGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 37050 | 1.08 | 0.000482 |
Target: 5'- uGAGCACCGUCAGCACGCACCUGUCGAg -3' miRNA: 3'- -CUCGUGGCAGUCGUGCGUGGACAGCU- -5' |
|||||||
26456 | 3' | -57.1 | NC_005357.1 | + | 25043 | 0.66 | 0.529536 |
Target: 5'- aAGCGgugCGUCGGCGCGaugcaggcaUACCUGUCGc -3' miRNA: 3'- cUCGUg--GCAGUCGUGC---------GUGGACAGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home