miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 5' -53.1 NC_005357.1 + 12929 0.67 0.720399
Target:  5'- cGUCGCCAuUGACGUgGACAcgaccgacGCGgaacUGGc -3'
miRNA:   3'- aCAGCGGUuGCUGUAgCUGU--------CGC----ACC- -5'
26456 5' -53.1 NC_005357.1 + 25139 0.67 0.709446
Target:  5'- aUGcgCGCCcGCGGCGcCGGCuuCGUGGa -3'
miRNA:   3'- -ACa-GCGGuUGCUGUaGCUGucGCACC- -5'
26456 5' -53.1 NC_005357.1 + 13932 0.67 0.698413
Target:  5'- aUGUCGCgCAGCGcCGUgGACuggaugcccucGGaCGUGGa -3'
miRNA:   3'- -ACAGCG-GUUGCuGUAgCUG-----------UC-GCACC- -5'
26456 5' -53.1 NC_005357.1 + 37639 0.67 0.698413
Target:  5'- aG-CGCCAGcCGGCGUgcUGggcGCAGUGUGGg -3'
miRNA:   3'- aCaGCGGUU-GCUGUA--GC---UGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 32426 0.67 0.698413
Target:  5'- cGUCuGCCAA-GACGaCGGCAGCGa-- -3'
miRNA:   3'- aCAG-CGGUUgCUGUaGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 26864 0.67 0.698413
Target:  5'- cGUCGUCAcugacgGCGcCAUUGACcuGGaCGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCuGUAGCUG--UC-GCACC- -5'
26456 5' -53.1 NC_005357.1 + 24552 0.67 0.698413
Target:  5'- gGUCGCgCAGCG-CggCGAUGGCGaGGc -3'
miRNA:   3'- aCAGCG-GUUGCuGuaGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 10001 0.68 0.676158
Target:  5'- aGUCGCUGcCGuCGUCuuGGCAGaCGUGGc -3'
miRNA:   3'- aCAGCGGUuGCuGUAG--CUGUC-GCACC- -5'
26456 5' -53.1 NC_005357.1 + 9185 0.68 0.676158
Target:  5'- uUGgCGCCGuCGACGuuggccugcUCGGCGGCGcGGc -3'
miRNA:   3'- -ACaGCGGUuGCUGU---------AGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 5896 0.68 0.664959
Target:  5'- gGUCGCCAGCGugGU-GAguGUGccgccgGGa -3'
miRNA:   3'- aCAGCGGUUGCugUAgCUguCGCa-----CC- -5'
26456 5' -53.1 NC_005357.1 + 15258 0.68 0.664959
Target:  5'- gGUCGUCGA-GGCAUCcGCGugcggcGCGUGGg -3'
miRNA:   3'- aCAGCGGUUgCUGUAGcUGU------CGCACC- -5'
26456 5' -53.1 NC_005357.1 + 28746 0.68 0.664959
Target:  5'- --aCGCCGACGACAUCcucACGGUGcgcGGu -3'
miRNA:   3'- acaGCGGUUGCUGUAGc--UGUCGCa--CC- -5'
26456 5' -53.1 NC_005357.1 + 36810 0.68 0.653728
Target:  5'- -cUCGCCA---ACAUCGACGcCGUGGc -3'
miRNA:   3'- acAGCGGUugcUGUAGCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 13722 0.68 0.653728
Target:  5'- cGUgCGCCGACaGCAUCGACcuUGUGa -3'
miRNA:   3'- aCA-GCGGUUGcUGUAGCUGucGCACc -5'
26456 5' -53.1 NC_005357.1 + 22422 0.68 0.653728
Target:  5'- -uUCGCCAGCcACGccUUGACGGCGgcGGa -3'
miRNA:   3'- acAGCGGUUGcUGU--AGCUGUCGCa-CC- -5'
26456 5' -53.1 NC_005357.1 + 5420 0.68 0.653728
Target:  5'- cGUaCGCUccACGGCGcggaUGGCGGCGUGGg -3'
miRNA:   3'- aCA-GCGGu-UGCUGUa---GCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 11489 0.68 0.652604
Target:  5'- gGUCGCCuGCGACAcCGcaaaggGCAGCGccugcgcUGGc -3'
miRNA:   3'- aCAGCGGuUGCUGUaGC------UGUCGC-------ACC- -5'
26456 5' -53.1 NC_005357.1 + 7261 0.68 0.642477
Target:  5'- aUGUCGCCGGCcuuguGCAgcuucUCGGCGGUGgucGGa -3'
miRNA:   3'- -ACAGCGGUUGc----UGU-----AGCUGUCGCa--CC- -5'
26456 5' -53.1 NC_005357.1 + 20609 0.69 0.631215
Target:  5'- -uUCGCCAgGCGGCGUCGcagguCGGUGUcGGc -3'
miRNA:   3'- acAGCGGU-UGCUGUAGCu----GUCGCA-CC- -5'
26456 5' -53.1 NC_005357.1 + 34689 0.69 0.631215
Target:  5'- cGUCGCCAACaGCAagcCGGCcgccgAGCGUGc -3'
miRNA:   3'- aCAGCGGUUGcUGUa--GCUG-----UCGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.