Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26456 | 5' | -53.1 | NC_005357.1 | + | 35180 | 0.7 | 0.520234 |
Target: 5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3' miRNA: 3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 33077 | 0.72 | 0.457303 |
Target: 5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3' miRNA: 3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 35050 | 0.72 | 0.417692 |
Target: 5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3' miRNA: 3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 19325 | 0.72 | 0.43724 |
Target: 5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3' miRNA: 3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 8949 | 0.72 | 0.457303 |
Target: 5'- -uUCGCCAGCGguggccguGCcgCGAuagcCAGCGUGGc -3' miRNA: 3'- acAGCGGUUGC--------UGuaGCU----GUCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 27146 | 0.71 | 0.47785 |
Target: 5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3' miRNA: 3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 36013 | 0.71 | 0.498841 |
Target: 5'- aGgCGCCAACGACAUgGGCcGCGa-- -3' miRNA: 3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 7511 | 0.7 | 0.546362 |
Target: 5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3' miRNA: 3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 14201 | 0.7 | 0.552961 |
Target: 5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3' miRNA: 3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 40276 | 0.7 | 0.552961 |
Target: 5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3' miRNA: 3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 38782 | 0.72 | 0.414806 |
Target: 5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3' miRNA: 3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 18884 | 0.73 | 0.398685 |
Target: 5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3' miRNA: 3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 8202 | 0.66 | 0.793816 |
Target: 5'- -uUCGUCAGCGACAU-GGCGGCc--- -3' miRNA: 3'- acAGCGGUUGCUGUAgCUGUCGcacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 36434 | 0.8 | 0.134944 |
Target: 5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3' miRNA: 3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 7592 | 0.78 | 0.183728 |
Target: 5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3' miRNA: 3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 27594 | 0.78 | 0.194125 |
Target: 5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3' miRNA: 3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 29996 | 0.76 | 0.260847 |
Target: 5'- ---gGUCGGCGACAUCGACAGCGc-- -3' miRNA: 3'- acagCGGUUGCUGUAGCUGUCGCacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 41130 | 0.76 | 0.267761 |
Target: 5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3' miRNA: 3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 33917 | 0.76 | 0.274821 |
Target: 5'- -uUCGCCGGCGACAUCagGGCAucGaCGUGGa -3' miRNA: 3'- acAGCGGUUGCUGUAG--CUGU--C-GCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 37117 | 0.74 | 0.328432 |
Target: 5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3' miRNA: 3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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