miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 5' -53.1 NC_005357.1 + 8202 0.66 0.793816
Target:  5'- -uUCGUCAGCGACAU-GGCGGCc--- -3'
miRNA:   3'- acAGCGGUUGCUGUAgCUGUCGcacc -5'
26456 5' -53.1 NC_005357.1 + 8996 0.67 0.73126
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5'
26456 5' -53.1 NC_005357.1 + 34689 0.69 0.631215
Target:  5'- cGUCGCCAACaGCAagcCGGCcgccgAGCGUGc -3'
miRNA:   3'- aCAGCGGUUGcUGUa--GCUG-----UCGCACc -5'
26456 5' -53.1 NC_005357.1 + 13932 0.67 0.698413
Target:  5'- aUGUCGCgCAGCGcCGUgGACuggaugcccucGGaCGUGGa -3'
miRNA:   3'- -ACAGCG-GUUGCuGUAgCUG-----------UC-GCACC- -5'
26456 5' -53.1 NC_005357.1 + 34848 0.77 0.216469
Target:  5'- cGUCGCCGACGACuUCGugGaCGUGu -3'
miRNA:   3'- aCAGCGGUUGCUGuAGCugUcGCACc -5'
26456 5' -53.1 NC_005357.1 + 9185 0.68 0.676158
Target:  5'- uUGgCGCCGuCGACGuuggccugcUCGGCGGCGcGGc -3'
miRNA:   3'- -ACaGCGGUuGCUGU---------AGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 5896 0.68 0.664959
Target:  5'- gGUCGCCAGCGugGU-GAguGUGccgccgGGa -3'
miRNA:   3'- aCAGCGGUUGCugUAgCUguCGCa-----CC- -5'
26456 5' -53.1 NC_005357.1 + 38745 0.75 0.28203
Target:  5'- cGUCGCCGugGugGauUCGcACgaaGGCGUGGa -3'
miRNA:   3'- aCAGCGGUugCugU--AGC-UG---UCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 16437 0.74 0.328432
Target:  5'- -aUCGCCGGCGGCGUUGAacaCGGCGUc- -3'
miRNA:   3'- acAGCGGUUGCUGUAGCU---GUCGCAcc -5'
26456 5' -53.1 NC_005357.1 + 32426 0.67 0.698413
Target:  5'- cGUCuGCCAA-GACGaCGGCAGCGa-- -3'
miRNA:   3'- aCAG-CGGUUgCUGUaGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 22422 0.68 0.653728
Target:  5'- -uUCGCCAGCcACGccUUGACGGCGgcGGa -3'
miRNA:   3'- acAGCGGUUGcUGU--AGCUGUCGCa-CC- -5'
26456 5' -53.1 NC_005357.1 + 11489 0.68 0.652604
Target:  5'- gGUCGCCuGCGACAcCGcaaaggGCAGCGccugcgcUGGc -3'
miRNA:   3'- aCAGCGGuUGCUGUaGC------UGUCGC-------ACC- -5'
26456 5' -53.1 NC_005357.1 + 19928 0.66 0.793816
Target:  5'- uUGUCGCCGcCGAacuccuuGUCGGC--CGUGGa -3'
miRNA:   3'- -ACAGCGGUuGCUg------UAGCUGucGCACC- -5'
26456 5' -53.1 NC_005357.1 + 5351 0.72 0.447209
Target:  5'- aUGUCGUUGGCGACAgccaacaugcUCGACAgguGCGUGc -3'
miRNA:   3'- -ACAGCGGUUGCUGU----------AGCUGU---CGCACc -5'
26456 5' -53.1 NC_005357.1 + 33077 0.72 0.457303
Target:  5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3'
miRNA:   3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5'
26456 5' -53.1 NC_005357.1 + 35180 0.7 0.520234
Target:  5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5'
26456 5' -53.1 NC_005357.1 + 22072 0.7 0.529978
Target:  5'- gGUCGCgGucggcgcGCGGC-UCGAUGGCGUGa -3'
miRNA:   3'- aCAGCGgU-------UGCUGuAGCUGUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 29960 0.7 0.541976
Target:  5'- uUGUCGUC-GCGGCGcaCGACGGCcUGGa -3'
miRNA:   3'- -ACAGCGGuUGCUGUa-GCUGUCGcACC- -5'
26456 5' -53.1 NC_005357.1 + 20609 0.69 0.631215
Target:  5'- -uUCGCCAgGCGGCGUCGcagguCGGUGUcGGc -3'
miRNA:   3'- acAGCGGU-UGCUGUAGCu----GUCGCA-CC- -5'
26456 5' -53.1 NC_005357.1 + 28668 0.69 0.608704
Target:  5'- --gUGCCGGCGGCcUCGcCAGCGcGGc -3'
miRNA:   3'- acaGCGGUUGCUGuAGCuGUCGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.