miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 5' -53.1 NC_005357.1 + 7261 0.68 0.642477
Target:  5'- aUGUCGCCGGCcuuguGCAgcuucUCGGCGGUGgucGGa -3'
miRNA:   3'- -ACAGCGGUUGc----UGU-----AGCUGUCGCa--CC- -5'
26456 5' -53.1 NC_005357.1 + 23252 0.7 0.575121
Target:  5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUagCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 35050 0.72 0.417692
Target:  5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3'
miRNA:   3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 27594 0.78 0.194125
Target:  5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5'
26456 5' -53.1 NC_005357.1 + 8996 0.67 0.73126
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5'
26456 5' -53.1 NC_005357.1 + 28746 0.68 0.664959
Target:  5'- --aCGCCGACGACAUCcucACGGUGcgcGGu -3'
miRNA:   3'- acaGCGGUUGCUGUAGc--UGUCGCa--CC- -5'
26456 5' -53.1 NC_005357.1 + 40276 0.7 0.552961
Target:  5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3'
miRNA:   3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 7592 0.78 0.183728
Target:  5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3'
miRNA:   3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5'
26456 5' -53.1 NC_005357.1 + 15258 0.68 0.664959
Target:  5'- gGUCGUCGA-GGCAUCcGCGugcggcGCGUGGg -3'
miRNA:   3'- aCAGCGGUUgCUGUAGcUGU------CGCACC- -5'
26456 5' -53.1 NC_005357.1 + 36434 0.8 0.134944
Target:  5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 34761 0.7 0.568449
Target:  5'- cGcCGCCAaagaacggcgcguguACGGCAagGAgcCGGCGUGGg -3'
miRNA:   3'- aCaGCGGU---------------UGCUGUagCU--GUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 36810 0.68 0.653728
Target:  5'- -cUCGCCA---ACAUCGACGcCGUGGc -3'
miRNA:   3'- acAGCGGUugcUGUAGCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 36013 0.71 0.498841
Target:  5'- aGgCGCCAACGACAUgGGCcGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5'
26456 5' -53.1 NC_005357.1 + 19325 0.72 0.43724
Target:  5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3'
miRNA:   3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5'
26456 5' -53.1 NC_005357.1 + 37117 0.74 0.328432
Target:  5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3'
miRNA:   3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 29996 0.76 0.260847
Target:  5'- ---gGUCGGCGACAUCGACAGCGc-- -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 40406 0.66 0.763171
Target:  5'- -aUCGCCugcGCGACuUCGcCAGCGagcgccUGGg -3'
miRNA:   3'- acAGCGGu--UGCUGuAGCuGUCGC------ACC- -5'
26456 5' -53.1 NC_005357.1 + 30379 0.67 0.73126
Target:  5'- cGgCGCCAuCGACuUCGACAcGC-UGGg -3'
miRNA:   3'- aCaGCGGUuGCUGuAGCUGU-CGcACC- -5'
26456 5' -53.1 NC_005357.1 + 25139 0.67 0.709446
Target:  5'- aUGcgCGCCcGCGGCGcCGGCuuCGUGGa -3'
miRNA:   3'- -ACa-GCGGuUGCUGUaGCUGucGCACC- -5'
26456 5' -53.1 NC_005357.1 + 10001 0.68 0.676158
Target:  5'- aGUCGCUGcCGuCGUCuuGGCAGaCGUGGc -3'
miRNA:   3'- aCAGCGGUuGCuGUAG--CUGUC-GCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.