miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 5' -53.1 NC_005357.1 + 37086 1.1 0.001114
Target:  5'- cUGUCGCCAACGACAUCGACAGCGUGGu -3'
miRNA:   3'- -ACAGCGGUUGCUGUAGCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 40276 0.7 0.552961
Target:  5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3'
miRNA:   3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 23252 0.7 0.575121
Target:  5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUagCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 8202 0.66 0.793816
Target:  5'- -uUCGUCAGCGACAU-GGCGGCc--- -3'
miRNA:   3'- acAGCGGUUGCUGUAgCUGUCGcacc -5'
26456 5' -53.1 NC_005357.1 + 29996 0.76 0.260847
Target:  5'- ---gGUCGGCGACAUCGACAGCGc-- -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 41130 0.76 0.267761
Target:  5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3'
miRNA:   3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 37117 0.74 0.328432
Target:  5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3'
miRNA:   3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 18884 0.73 0.398685
Target:  5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3'
miRNA:   3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5'
26456 5' -53.1 NC_005357.1 + 19325 0.72 0.43724
Target:  5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3'
miRNA:   3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5'
26456 5' -53.1 NC_005357.1 + 14201 0.7 0.552961
Target:  5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3'
miRNA:   3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 27146 0.71 0.47785
Target:  5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3'
miRNA:   3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 35050 0.72 0.417692
Target:  5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3'
miRNA:   3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 36434 0.8 0.134944
Target:  5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 36013 0.71 0.498841
Target:  5'- aGgCGCCAACGACAUgGGCcGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5'
26456 5' -53.1 NC_005357.1 + 7592 0.78 0.183728
Target:  5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3'
miRNA:   3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5'
26456 5' -53.1 NC_005357.1 + 38782 0.72 0.414806
Target:  5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3'
miRNA:   3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 7511 0.7 0.546362
Target:  5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3'
miRNA:   3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 34761 0.7 0.568449
Target:  5'- cGcCGCCAaagaacggcgcguguACGGCAagGAgcCGGCGUGGg -3'
miRNA:   3'- aCaGCGGU---------------UGCUGUagCU--GUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 27594 0.78 0.194125
Target:  5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5'
26456 5' -53.1 NC_005357.1 + 33917 0.76 0.274821
Target:  5'- -uUCGCCGGCGACAUCagGGCAucGaCGUGGa -3'
miRNA:   3'- acAGCGGUUGCUGUAG--CUGU--C-GCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.