Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26456 | 5' | -53.1 | NC_005357.1 | + | 13616 | 0.66 | 0.793816 |
Target: 5'- -cUUGCCGACaGCAUCGGUAGCGg-- -3' miRNA: 3'- acAGCGGUUGcUGUAGCUGUCGCacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 36350 | 0.66 | 0.783762 |
Target: 5'- cG-CGCuCGACGACuUCGagGCGGUGUGa -3' miRNA: 3'- aCaGCG-GUUGCUGuAGC--UGUCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 5804 | 0.66 | 0.783762 |
Target: 5'- cGgcagCGCCAGCGGauaGUCGGgcaUGGCGUGc -3' miRNA: 3'- aCa---GCGGUUGCUg--UAGCU---GUCGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 8647 | 0.66 | 0.793816 |
Target: 5'- gGUCGCCGgccuucaucGCGcgGUCGGCAuuGCGUGc -3' miRNA: 3'- aCAGCGGU---------UGCugUAGCUGU--CGCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 8202 | 0.66 | 0.793816 |
Target: 5'- -uUCGUCAGCGACAU-GGCGGCc--- -3' miRNA: 3'- acAGCGGUUGCUGUAgCUGUCGcacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 35600 | 0.66 | 0.783762 |
Target: 5'- cGUCGCCGAgGGCAaCGACGaaacccgcGcCGUGu -3' miRNA: 3'- aCAGCGGUUgCUGUaGCUGU--------C-GCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 40406 | 0.66 | 0.763171 |
Target: 5'- -aUCGCCugcGCGACuUCGcCAGCGagcgccUGGg -3' miRNA: 3'- acAGCGGu--UGCUGuAGCuGUCGC------ACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 34424 | 0.66 | 0.763171 |
Target: 5'- cUGgCGCCAAgGGCAcgucCGACGcCGUGGu -3' miRNA: 3'- -ACaGCGGUUgCUGUa---GCUGUcGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 34134 | 0.66 | 0.763171 |
Target: 5'- --cCGCUGGCuGCAcugcccCGGCAGCGUGGc -3' miRNA: 3'- acaGCGGUUGcUGUa-----GCUGUCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 19928 | 0.66 | 0.793816 |
Target: 5'- uUGUCGCCGcCGAacuccuuGUCGGC--CGUGGa -3' miRNA: 3'- -ACAGCGGUuGCUg------UAGCUGucGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 8904 | 0.66 | 0.772513 |
Target: 5'- aUGgCGCUAucgGCGGCGcgcUCGAUggcuucgGGCGUGGa -3' miRNA: 3'- -ACaGCGGU---UGCUGU---AGCUG-------UCGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 4876 | 0.67 | 0.742017 |
Target: 5'- cGUUGcCCAGCG-CggCGACGGCGg-- -3' miRNA: 3'- aCAGC-GGUUGCuGuaGCUGUCGCacc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 18763 | 0.67 | 0.740947 |
Target: 5'- -uUUGCCGGCGAuuucuucCAUCGuCAGCGUcgaGGc -3' miRNA: 3'- acAGCGGUUGCU-------GUAGCuGUCGCA---CC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 18467 | 0.67 | 0.73126 |
Target: 5'- cGgCGCCGGCGGCGUCGGCcGauucguccacCGUGa -3' miRNA: 3'- aCaGCGGUUGCUGUAGCUGuC----------GCACc -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 13932 | 0.67 | 0.698413 |
Target: 5'- aUGUCGCgCAGCGcCGUgGACuggaugcccucGGaCGUGGa -3' miRNA: 3'- -ACAGCG-GUUGCuGUAgCUG-----------UC-GCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 24552 | 0.67 | 0.698413 |
Target: 5'- gGUCGCgCAGCG-CggCGAUGGCGaGGc -3' miRNA: 3'- aCAGCG-GUUGCuGuaGCUGUCGCaCC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 40560 | 0.67 | 0.720399 |
Target: 5'- gGUCGCCAAUuuCAUCaagcACGGCGaGGa -3' miRNA: 3'- aCAGCGGUUGcuGUAGc---UGUCGCaCC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 25139 | 0.67 | 0.709446 |
Target: 5'- aUGcgCGCCcGCGGCGcCGGCuuCGUGGa -3' miRNA: 3'- -ACa-GCGGuUGCUGUaGCUGucGCACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 12929 | 0.67 | 0.720399 |
Target: 5'- cGUCGCCAuUGACGUgGACAcgaccgacGCGgaacUGGc -3' miRNA: 3'- aCAGCGGUuGCUGUAgCUGU--------CGC----ACC- -5' |
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26456 | 5' | -53.1 | NC_005357.1 | + | 26864 | 0.67 | 0.698413 |
Target: 5'- cGUCGUCAcugacgGCGcCAUUGACcuGGaCGUGGa -3' miRNA: 3'- aCAGCGGU------UGCuGUAGCUG--UC-GCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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