miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 5' -53.1 NC_005357.1 + 37086 1.1 0.001114
Target:  5'- cUGUCGCCAACGACAUCGACAGCGUGGu -3'
miRNA:   3'- -ACAGCGGUUGCUGUAGCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 19049 0.85 0.063302
Target:  5'- gGcCGCCGGCGGCGUCGAuCAGCGUGu -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCU-GUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 36434 0.8 0.134944
Target:  5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 6297 0.8 0.138834
Target:  5'- gGUCGCCcACGACAUUGACGGCa--- -3'
miRNA:   3'- aCAGCGGuUGCUGUAGCUGUCGcacc -5'
26456 5' -53.1 NC_005357.1 + 7592 0.78 0.183728
Target:  5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3'
miRNA:   3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5'
26456 5' -53.1 NC_005357.1 + 27594 0.78 0.194125
Target:  5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5'
26456 5' -53.1 NC_005357.1 + 34848 0.77 0.216469
Target:  5'- cGUCGCCGACGACuUCGugGaCGUGu -3'
miRNA:   3'- aCAGCGGUUGCUGuAGCugUcGCACc -5'
26456 5' -53.1 NC_005357.1 + 29996 0.76 0.260847
Target:  5'- ---gGUCGGCGACAUCGACAGCGc-- -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 41130 0.76 0.267761
Target:  5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3'
miRNA:   3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 14981 0.76 0.274821
Target:  5'- gGUCGCCAgaAUGGCGUCGGCAuugGCGUu- -3'
miRNA:   3'- aCAGCGGU--UGCUGUAGCUGU---CGCAcc -5'
26456 5' -53.1 NC_005357.1 + 33917 0.76 0.274821
Target:  5'- -uUCGCCGGCGACAUCagGGCAucGaCGUGGa -3'
miRNA:   3'- acAGCGGUUGCUGUAG--CUGU--C-GCACC- -5'
26456 5' -53.1 NC_005357.1 + 11440 0.75 0.281302
Target:  5'- gGUCGCCGauaaggcGCGACAcCGGCAGCuuuucaGUGGc -3'
miRNA:   3'- aCAGCGGU-------UGCUGUaGCUGUCG------CACC- -5'
26456 5' -53.1 NC_005357.1 + 38745 0.75 0.28203
Target:  5'- cGUCGCCGugGugGauUCGcACgaaGGCGUGGa -3'
miRNA:   3'- aCAGCGGUugCugU--AGC-UG---UCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 16437 0.74 0.328432
Target:  5'- -aUCGCCGGCGGCGUUGAacaCGGCGUc- -3'
miRNA:   3'- acAGCGGUUGCUGUAGCU---GUCGCAcc -5'
26456 5' -53.1 NC_005357.1 + 37117 0.74 0.328432
Target:  5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3'
miRNA:   3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 19626 0.73 0.389392
Target:  5'- gGUCaugcggGCC-GCGACAUCGGcCAGCGUcGGg -3'
miRNA:   3'- aCAG------CGGuUGCUGUAGCU-GUCGCA-CC- -5'
26456 5' -53.1 NC_005357.1 + 18884 0.73 0.398685
Target:  5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3'
miRNA:   3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5'
26456 5' -53.1 NC_005357.1 + 5553 0.73 0.40717
Target:  5'- gGUCGCCcgccACGGUAUCGACGGCGccaacgcUGGc -3'
miRNA:   3'- aCAGCGGu---UGCUGUAGCUGUCGC-------ACC- -5'
26456 5' -53.1 NC_005357.1 + 38782 0.72 0.414806
Target:  5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3'
miRNA:   3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 23098 0.72 0.417692
Target:  5'- cGaCGCCAACGGCGgcgcccacggCGACAGCGg-- -3'
miRNA:   3'- aCaGCGGUUGCUGUa---------GCUGUCGCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.