miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 5' -53.1 NC_005357.1 + 4876 0.67 0.742017
Target:  5'- cGUUGcCCAGCG-CggCGACGGCGg-- -3'
miRNA:   3'- aCAGC-GGUUGCuGuaGCUGUCGCacc -5'
26456 5' -53.1 NC_005357.1 + 5335 0.69 0.619954
Target:  5'- cGUgGCgCAGCauGGCAUCGcGCuGCGUGGc -3'
miRNA:   3'- aCAgCG-GUUG--CUGUAGC-UGuCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 5351 0.72 0.447209
Target:  5'- aUGUCGUUGGCGACAgccaacaugcUCGACAgguGCGUGc -3'
miRNA:   3'- -ACAGCGGUUGCUGU----------AGCUGU---CGCACc -5'
26456 5' -53.1 NC_005357.1 + 5420 0.68 0.653728
Target:  5'- cGUaCGCUccACGGCGcggaUGGCGGCGUGGg -3'
miRNA:   3'- aCA-GCGGu-UGCUGUa---GCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 5553 0.73 0.40717
Target:  5'- gGUCGCCcgccACGGUAUCGACGGCGccaacgcUGGc -3'
miRNA:   3'- aCAGCGGu---UGCUGUAGCUGUCGC-------ACC- -5'
26456 5' -53.1 NC_005357.1 + 5617 0.67 0.752659
Target:  5'- gGUaGCC-ACGGCGUCGAUguuGGCGaGGu -3'
miRNA:   3'- aCAgCGGuUGCUGUAGCUG---UCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 5804 0.66 0.783762
Target:  5'- cGgcagCGCCAGCGGauaGUCGGgcaUGGCGUGc -3'
miRNA:   3'- aCa---GCGGUUGCUg--UAGCU---GUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 5896 0.68 0.664959
Target:  5'- gGUCGCCAGCGugGU-GAguGUGccgccgGGa -3'
miRNA:   3'- aCAGCGGUUGCugUAgCUguCGCa-----CC- -5'
26456 5' -53.1 NC_005357.1 + 6297 0.8 0.138834
Target:  5'- gGUCGCCcACGACAUUGACGGCa--- -3'
miRNA:   3'- aCAGCGGuUGCUGUAGCUGUCGcacc -5'
26456 5' -53.1 NC_005357.1 + 7261 0.68 0.642477
Target:  5'- aUGUCGCCGGCcuuguGCAgcuucUCGGCGGUGgucGGa -3'
miRNA:   3'- -ACAGCGGUUGc----UGU-----AGCUGUCGCa--CC- -5'
26456 5' -53.1 NC_005357.1 + 7511 0.7 0.546362
Target:  5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3'
miRNA:   3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 7592 0.78 0.183728
Target:  5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3'
miRNA:   3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5'
26456 5' -53.1 NC_005357.1 + 8202 0.66 0.793816
Target:  5'- -uUCGUCAGCGACAU-GGCGGCc--- -3'
miRNA:   3'- acAGCGGUUGCUGUAgCUGUCGcacc -5'
26456 5' -53.1 NC_005357.1 + 8647 0.66 0.793816
Target:  5'- gGUCGCCGgccuucaucGCGcgGUCGGCAuuGCGUGc -3'
miRNA:   3'- aCAGCGGU---------UGCugUAGCUGU--CGCACc -5'
26456 5' -53.1 NC_005357.1 + 8904 0.66 0.772513
Target:  5'- aUGgCGCUAucgGCGGCGcgcUCGAUggcuucgGGCGUGGa -3'
miRNA:   3'- -ACaGCGGU---UGCUGU---AGCUG-------UCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 8949 0.72 0.457303
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAuagcCAGCGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCU----GUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 8996 0.67 0.73126
Target:  5'- -uUCGCCAGCGguggccguGCcgCGAUAGCcagcgGUGGc -3'
miRNA:   3'- acAGCGGUUGC--------UGuaGCUGUCG-----CACC- -5'
26456 5' -53.1 NC_005357.1 + 9185 0.68 0.676158
Target:  5'- uUGgCGCCGuCGACGuuggccugcUCGGCGGCGcGGc -3'
miRNA:   3'- -ACaGCGGUuGCUGU---------AGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 9847 0.69 0.597476
Target:  5'- -cUCGgUuuCGGCGUCGAUgAGCGUGGc -3'
miRNA:   3'- acAGCgGuuGCUGUAGCUG-UCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 10001 0.68 0.676158
Target:  5'- aGUCGCUGcCGuCGUCuuGGCAGaCGUGGc -3'
miRNA:   3'- aCAGCGGUuGCuGUAG--CUGUC-GCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.