miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26456 5' -53.1 NC_005357.1 + 41130 0.76 0.267761
Target:  5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3'
miRNA:   3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 40718 0.7 0.564012
Target:  5'- uUGUCGCCAcCGACA-CGAUGGaCGaauUGGu -3'
miRNA:   3'- -ACAGCGGUuGCUGUaGCUGUC-GC---ACC- -5'
26456 5' -53.1 NC_005357.1 + 40560 0.67 0.720399
Target:  5'- gGUCGCCAAUuuCAUCaagcACGGCGaGGa -3'
miRNA:   3'- aCAGCGGUUGcuGUAGc---UGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 40406 0.66 0.763171
Target:  5'- -aUCGCCugcGCGACuUCGcCAGCGagcgccUGGg -3'
miRNA:   3'- acAGCGGu--UGCUGuAGCuGUCGC------ACC- -5'
26456 5' -53.1 NC_005357.1 + 40276 0.7 0.552961
Target:  5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3'
miRNA:   3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5'
26456 5' -53.1 NC_005357.1 + 38782 0.72 0.414806
Target:  5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3'
miRNA:   3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 38745 0.75 0.28203
Target:  5'- cGUCGCCGugGugGauUCGcACgaaGGCGUGGa -3'
miRNA:   3'- aCAGCGGUugCugU--AGC-UG---UCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 37639 0.67 0.698413
Target:  5'- aG-CGCCAGcCGGCGUgcUGggcGCAGUGUGGg -3'
miRNA:   3'- aCaGCGGUU-GCUGUA--GC---UGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 37524 0.7 0.557374
Target:  5'- cGUCGCCGACcugucgaACAUCGAaggacgcaugauuGCGUGGc -3'
miRNA:   3'- aCAGCGGUUGc------UGUAGCUgu-----------CGCACC- -5'
26456 5' -53.1 NC_005357.1 + 37117 0.74 0.328432
Target:  5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3'
miRNA:   3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 37086 1.1 0.001114
Target:  5'- cUGUCGCCAACGACAUCGACAGCGUGGu -3'
miRNA:   3'- -ACAGCGGUUGCUGUAGCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 36996 0.67 0.742017
Target:  5'- uUGUCGCaAACagUAUCGGCAaCGUGGa -3'
miRNA:   3'- -ACAGCGgUUGcuGUAGCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 36810 0.68 0.653728
Target:  5'- -cUCGCCA---ACAUCGACGcCGUGGc -3'
miRNA:   3'- acAGCGGUugcUGUAGCUGUcGCACC- -5'
26456 5' -53.1 NC_005357.1 + 36434 0.8 0.134944
Target:  5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 36350 0.66 0.783762
Target:  5'- cG-CGCuCGACGACuUCGagGCGGUGUGa -3'
miRNA:   3'- aCaGCG-GUUGCUGuAGC--UGUCGCACc -5'
26456 5' -53.1 NC_005357.1 + 36013 0.71 0.498841
Target:  5'- aGgCGCCAACGACAUgGGCcGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5'
26456 5' -53.1 NC_005357.1 + 35600 0.66 0.783762
Target:  5'- cGUCGCCGAgGGCAaCGACGaaacccgcGcCGUGu -3'
miRNA:   3'- aCAGCGGUUgCUGUaGCUGU--------C-GCACc -5'
26456 5' -53.1 NC_005357.1 + 35180 0.7 0.520234
Target:  5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5'
26456 5' -53.1 NC_005357.1 + 35050 0.72 0.417692
Target:  5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3'
miRNA:   3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5'
26456 5' -53.1 NC_005357.1 + 34848 0.77 0.216469
Target:  5'- cGUCGCCGACGACuUCGugGaCGUGu -3'
miRNA:   3'- aCAGCGGUUGCUGuAGCugUcGCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.